1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttaatggaaaatctttatgttgaattcaaattttctggctattgactcttgtttccatgattaaattgaaagtctttttcttttaacttggacaatgcagTGAAGGAAATTCTCAAGCTCTGCCCTCCTGAGCAGCTGGTAACTCATTACAAGATTGGAAGTTTCAAATTAGGCGATGTTGATGATTTTCTACTGAAGGT
species | Glycine max |
transcript | GLYMA10G24060.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTTAAAAAATTGCAAGAGAATTGAGAAGTTAGACAATCCAATTAACCCAG TGAAGGAAATTCTCAAGCTCTGCCCTCCTGAGCAGCTGGTAACTCATTACAEST: gi|16104768|gb|BI892508.1|BI892508
genomic: TTTAAAAAATTGCAAGAGAATTGAGAAGTTAGACAATCCAATTAACCCAGgtatatcaag ... gacaatgcagTGAAGGAAATTCTCAAGCTCTGCCCTCCTGAGCAGCTGGTAACTCATTACA
EST: TTTAAAAAATTGCAAGAGAATTGAGAAGTTAGACAATCCAATTAACCCAG TGAAGGAAATTCTCAAGCTCTGCCCTCCTGAGCAGCTGGTAACTCATTACAEST: gi|254319331|gb|GR828951.1|GR828951
genomic: TTTAAAAAATTGCAAGAGAATTGAGAAGTTAGACAATCCAATTAACCCAGgtatatcaag ... gacaatgcagTGAAGGAAATTCTCAAGCTCTGCCCTCCTGAGCAGCTGGTAACTCATTACA
EST: TTTAAAAAATTGCAAGAGAATTGAGAAGTTAGACAATCCAATTAACCCAG TGAAGGAAATTCTCAAGCTCTGCCCTCCTGAGCAGCTGGTAACTCATTACAEST: gi|254319332|gb|GR828952.1|GR828952
genomic: TTTAAAAAATTGCAAGAGAATTGAGAAGTTAGACAATCCAATTAACCCAGgtatatcaag ... gacaatgcagTGAAGGAAATTCTCAAGCTCTGCCCTCCTGAGCAGCTGGTAACTCATTACA
EST: TTAAAAAATTGCAAGAGAATTGAGAAGTTAGACAATCCCAATTAACCCAG TGAAGGAAATTCTCAAGCTCTGCCCTCCTGAGCAGCTGGTAACTCATTACA
genomic: TTAAAAAATTGCAAGAGAATTGAGAAGTTAGACAAT-CCAATTAACCCAGgtatatcaag ... gacaatgcagTGAAGGAAATTCTCAAGCTCTGCCCTCCTGAGCAGCTGGTAACTCATTACA
ctcttgtttccatgattaaattgaaagtctttttcttttaacttggacaatgcagTGAAGGAAATTCTCAAGCTCTGCCCTCCTGAGCAGCTGGTAACTCATTACAAGATTGGAAGTTTCAAATTAGGCGATGTTGATGATTTTCTACTGAAGGT
ttttaac putative branch site (score: 2)
attaaattgaaagtct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaatggaaaatctttatgttgaattcaaattttctggctattgactcttgtttccatgattaaattgaaagtctttttcttttaacttggacaatgcagTGAAGGAAATTCTCAAGCTCTGCCCTCCTGAGCAGCTGGTAACTCATTACAAGATTGGAAGTTTCAAATTAGGCGATGTTGATGATTTTCTACTGAAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - gaaaatc
- - - - - - - - - - tgaattc
- - - - - - - - - - - - - - - - - - -gctattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgat