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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggcttatcagaattgattttgttgcttttggaatctaaactgtagcaatgtagctgcttgtactttgaggatttgttctacagtctgcatatattttgacatggtatgttttacagGAACTCCGTTGTACATGGCTCCAGAGCTTGTACGGGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATATT

Basic information

species Glycine max
transcript GLYMA10G22860.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G22860.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os12g24550.1 (Oryza sativa), 3'ss of exon 7
gtttggcttatcagaattgattttgttgcttttggaatctaaactgtagcaatgtagctgcttgtactttgaggatttgttctacagtctgcatatattttgacatggtatgttttacagGAACTCCGTTGTACATGGCTCCAGAGCTTGTACGGGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATATT
 | |||    |    |  |||| |  ||  |  || ||    |||   |  |  |   | | | |  | ||   |  ||||||||       | | ||| |       | |      ||||||| ||  | |||||||||||||| |||||  |||||||||| ||||||||||| | |||||| ||||| ||||| ||||| ||
-tctggtcctttccta--gattatagtgactcaggtat----actcatgtgaactgatttccttttttctggctacctgttctac------taaacattct-------tcttccacccagGAACACCTCTATACATGGCTCCAGAACTTGTGAGGGAACAACCTTACAACCACACAGCAGATTTGTGGTCCCTTGGCGTCATCTT

upper sequence: GLYMA10G22860.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv16s0039g02400.t01 (Vitis vinifera), 3'ss of exon 6
gtttggcttatcagaat----tgattttg--ttgcttttggaatct-aaactgtagcaatgtagctgcttgtactttgaggatttgttctacagtctgcatatattttga-catggtatgtt------ttacagGAACTCCGTTGTACATGGCTCCAGAGCTTGTACGGGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATATT
|||||||| |||  |||    | | | |   |||| |||  | | | |||| ||    |   |||   | | |  ||    |    ||    | ||||| |||   |  | |||| | || |      || |||| ||||| ||||| ||||| |||||||| |||||||| ||||| |||||||||||||  ||||| ||||||||||| || || ||
gtttggctcatctcaatgctatcagtatagtttgcctttttagtttgaaaccgttatcactgagcca-tagaaaattagttacaaatttctgactctgcctatcactcaatcatgctttgatcaatattttcagGTACTCCTTTGTATATGGCCCCAGAGCTGGTACGGGAGCAACCCTACAACCACACTGCTGATTTGTGGTCTCTTGGAGTTATCTT

upper sequence: GLYMA10G22860.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ33693 (Selaginella moellendorffii), 3'ss of exon 6
gtttggcttatcagaattgattttgttgcttttggaatctaaactgtagcaatgtagctgcttgtactttgaggatttgttctacagtctgcatatattt-tgacatggt-atgtt-ttacagGAACTCCGTTGTACATGGCTCCAGAGCTTGTACGGGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATATT
                                                                         | | | || || ||| |  ||| |||  ||| |  || | | | |||||||||| ||  ||||||||||||| |||||||| || || || || |||||||| || | ||||||||||||||||||||| |||||
-------------------------------------------------------------------------gttgtcttttagagt-tctatacattcatgaaaccgtgacgctattacagGAACGCCACTGTACATGGCTCCCGAGCTTGTTCGTGAGCAGCCTTACAACCATACGGCAGATTTATGGTCTCTTGGTGTGATATT

upper sequence: GLYMA10G22860.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ37043 (Selaginella moellendorffii), 3'ss of exon 6
gtttggcttatcagaattgattttgttgcttttggaatctaaactgtagcaatgtagctgcttgtactttgaggatttgttctacagtctgcatatattt-tgacatggt-atgtt-ttacagGAACTCCGTTGTACATGGCTCCAGAGCTTGTACGGGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATATT
                                                                           | | || || ||| |  ||| |||  ||| |  || | | | |||||||||| ||  ||||||||||||| |||||||| || || || || ||||||||||| | ||||||||||||||||||||| |||  
---------------------------------------------------------------------------tgtcttttagagt-tctatacattcatgaaaccgtgacgctattACAGGAACGCCACTGTACATGGCTCCCGAGCTTGTTCGTGAGCAGCCTTACAACCACACGGCAGATTTATGGTCTCTTGGTGTGATA--


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttgaggatttgttctacagtctgcatatattttgacatggtatgttttacagGAACTCCGTTGTACATGGCTCCAGAGCTTGTACGGGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATATT
                                ttttgac  putative branch site (score: 3)
                           atatattttgacat  TA-rich tract