1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatggtaaaccattcaagatgatgtataaaatgatcgagttccattgcgttgtgcttattttgtgtgctgtttcaccttcgccactctttcttttgcaagGTTTTCAATGAGATAAACAGCCGAGAAATCGAAAAGATAAACATATTCAAAGGCATGTTTGAGAGCTGGATATTTTTCACGGTGATATTCTCCACAGTGG
species | Glycine max |
transcript | GLYMA10G15800.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTATTTTGCCAG GTTTTCTAATTGAGATAAACAGCCGAGAAATCGAAAAGATAAACATATTCAEST: gi|193340395|gb|FK305818.1|FK305818
genomic: TGTATTTTGCCAGgtaaagtatc ... cttttgcaagGTTTTC-AA-TGAGATAAACAGCCGAGAAATCGAAAAGATAAACATATTCA
EST: ATATTCAACTCCTTTGTATTTTGCCAG GTTTTCAATGAGATAAACAGCCGAGAAATCGAAAAGATAAACATATTCAAAEST: gi|22523561|gb|BU082372.1|BU082372
genomic: ATATTCAACTCCTTTGTATTTTGCCAGgtaaagtatc ... cttttgcaagGTTTTCAATGAGATAAACAGCCGAGAAATCGAAAAGATAAACATATTCAAA
EST: CTTTGATATTCAACTCCTTTGTATTTTGCCAG GTTTTCAATGAGATAAACAGCCGAGAAATCGAAAAGATAAACATATTCAAAEST: gi|16348228|gb|BI973814.1|BI973814
genomic: CTTTGATATTCAACTCCTTTGTATTTTGCCAGgtaaagtatc ... cttttgcaagGTTTTCAATGAGATAAACAGCCGAGAAATCGAAAAGATAAACATATTCAAA
EST: CTCCTTTGTATTTTGCCAG GTTTTCAATGAGATAAACAGCCGAGAAATCGAAAAGATAAACATATTCAAAEST: gi|37997527|gb|CF809116.1|CF809116
genomic: CTCCTTTGTATTTTGCCAGgtaaagtatc ... cttttgcaagGTTTTCAATGAGATAAACAGCCGAGAAATCGAAAAGATAAACATATTCAAA
EST: CGACTATAGTGCTCAACACTTTGATATTCAACTCCTTTGTATTTTGCCAG GTTTTCAATGAGATAAACAGCCGAGAAATCGAAAAGATAAACATATTCAAAEST: gi|9203602|gb|BE329826.1|BE329826
genomic: CGACTATAGTGCTCAACACTTTGATATTCAACTCCTTTGTATTTTGCCAGgtaaagtatc ... cttttgcaagGTTTTCAATGAGATAAACAGCCGAGAAATCGAAAAGATAAACATATTCAAA
EST: CGACTATAGTGCTCAACACTTTGATATTCAACTCCTTTGTATTTTGCCAG GTTTTCAATGAGATAAACAGCCGAGAAATCGAAAAGATAAACATATTCAAAEST: gi|208285591|gb|GE085117.1|GE085117
genomic: CGACTATAGTGCTCAACACTTTGATATTCAACTCCTTTGTATTTTGCCAGgtaaagtatc ... cttttgcaagGTTTTCAATGAGATAAACAGCCGAGAAATCGAAAAGATAAACATATTCAAA
EST: CGACTATAGTGCTCAACACTTTGATATTCAACTCCTTTGTATTTTGCCAG GTTTTCAATGAGATAAACAGCCGAGAAATCGAAAAGATAAACATATTCAAA
genomic: CGACTATAGTGCTCAACACTTTGATATTCAACTCCTTTGTATTTTGCCAGgtaaagtatc ... cttttgcaagGTTTTCAATGAGATAAACAGCCGAGAAATCGAAAAGATAAACATATTCAAA
tgcgttgtgcttattttgtgtgctgtttcaccttcgccactctttcttttgcaagGTTTTCAATGAGATAAACAGCCGAGAAATCGAAAAGATAAACATATTCAAAGGCATGTTTGAGAGCTGGATATTTTTCACGGTGATATTCTCCACAGTGG
ctgtttcaccttcgcc CT-rich tract
ttattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatggtaaaccattcaagatgatgtataaaatgatcgagttccattgcgttgtgcttattttgtgtgctgtttcaccttcgccactctttcttttgcaagGTTTTCAATGAGATAAACAGCCGAGAAATCGAAAAGATAAACATATTCAAAGGCATGTTTGAGAGCTGGATATTTTTCACGGTGATATTCTCCACAGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - -ccattca
- - - - - - - - -gatgatg
- - - - - - - - - - - - - - - - - - - - -ccattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - tgcttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgtt