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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acatatattacctaataggcagtgctaaccattatattaggttttattgttcttttctgttggttgctctgaaatatttactccgctatgttgctttcagGGTTTTGTTTCAGCAGTAAACCATATGCGCTCTTTTGTTCCTGCCATTTATGATGTAACTGTGGCAATTCCCAAGAGTTCACCTGCTCCTACAATGCTAA

Basic information

species Glycine max
transcript GLYMA10G12560.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G12560.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0007g08110.t01 (Vitis vinifera), 3'ss of exon 7
acatatattacctaataggcagtgctaaccattatattaggttttattgttcttttctgttggtt-gctctgaaatatttactcc-gctatgt-----tgctttcagGGTTTTGTTTCAGCAGTAAACCATATGCGCTCTTTTGTTCCTGCCATTTATGATGTAACTGTGGCAATTCCCAAGAGTTCACCTGCTCCTACAATGCTAA
       ||   |  || ||| | |    || | |     ||    |  |||  || | |||||| | || |||||||||| | |   ||| |     |||| |||||||||||||||||| || |  || ||||| || |||||||| ||  ||||||||||||| |||||||||||||| | |   ||| | || |||||||| |
------cttcatttttatgca-tacctctcaattttgggagtgccgtgattcaattttattggtttgatcagaaatatttatttctattatttctgtttgctatcagGGTTTTGTTTCAGCTGTCAGTCACATGCGTTCATTTGTTCCAGCTGTTTATGATGTAACAGTGGCAATTCCCAAAACTCAGCCTTCACCAACAATGCTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgttcttttctgttggttgctctgaaatatttactccgctatgttgctttcagGGTTTTGTTTCAGCAGTAAACCATATGCGCTCTTTTGTTCCTGCCATTTATGATGTAACTGTGGCAATTCCCAAGAGTTCACCTGCTCCTACAATGCTAA
                                             ttgctttc  CT-rich tract
                        tgaaatattta  TA-rich tract