1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...catgcagttatttttacttttagcggagagattctgcatatattacttgggttgttcaacaatttccttgatgcctattttcctctgttcatttatgtagGAGAACTAAAGGAAACAAAAGCCTACAAGAAATGGACAAAGAAAATATCAGAAATCAAGCCACCAACTAGTCCCTTAAGAAGGAGGGCAAA
species | Glycine max |
transcript | GLYMA10G12350.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACTTGACTCACACCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTG GAGAACTAAAGGAAACAAAAGCCTACAAGAAATGGACAAAGAAAATATCAGEST: gi|151412912|gb|EV282724.1|EV282724
genomic: ACTTGACTCACACCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTGgtaagaatat ... atttatgtagGAGAACTAAAGGAAACAAAAGCCTACAAGAAATGGACAAAGAAAATATCAG
EST: ACTTGACTCACACCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTG GAGAACTAAAGGAAACAAAAGCCTACAAGAAATGGACAAAGAAAATATCAGEST: gi|151396151|gb|EV266028.1|EV266028
genomic: ACTTGACTCACACCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTGgtaagaatat ... atttatgtagGAGAACTAAAGGAAACAAAAGCCTACAAGAAATGGACAAAGAAAATATCAG
EST: ACTTGACTCACACCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTG GAGAACTAAAGGAAACAAAAGCCTACAAGAAATGGACAAAGAAAATATCAGEST: gi|41145363|gb|CK605574.1|CK605574
genomic: ACTTGACTCACACCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTGgtaagaatat ... atttatgtagGAGAACTAAAGGAAACAAAAGCCTACAAGAAATGGACAAAGAAAATATCAG
EST: ACTTGACTCACACCGATTCAGGGATATTATTGATGAGGTTATAGCTGCTG GAGAACTAAAGGAAACAAAAGCCTACAAGAAATGGACAAAGAAAATATCAGEST: gi|208237877|gb|GE040365.1|GE040365
genomic: ACTTGACTCACACCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTGgtaagaatat ... atttatgtagGAGAACTAAAGGAAACAAAAGCCTACAAGAAATGGACAAAGAAAATATCAG
EST: ACTTGACTCACACCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTG GAGAACTAAAGEST: gi|192323158|gb|FK017384.1|FK017384
genomic: ACTTGACTCACACCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTGgtaagaatat ... atttatgtagGAGAACTAAAG
EST: ACTTGACTCACACCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTG GAGAACTAAAG-AAACEST: gi|207758651|gb|GD728697.1|GD728697
genomic: ACTTGACTCACACCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTGgtaagaatat ... atttatgtagGAGAACTAAAGGAAAC
EST: ACTTGACTCACACCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTG GAGAACTAAAAGGAAAACAAAAEST: gi|151402844|gb|EV272657.1|EV272657
genomic: ACTTGACTCACACCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTGgtaagaatat ... atttatgtagGAGAACTAAA-GGAAA-CAAAA
EST: ACTTGACTCACACCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTG GAGAACTAAAGGAAACAAAAGCCTACAAGAAATGGACAAAGAAAATATCAGEST: gi|151407863|gb|EV277678.1|EV277678
genomic: ACTTGACTCACACCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTGgtaagaatat ... atttatgtagGAGAACTAAAGGAAACAAAAGCCTACAAGAAATGGACAAAGAAAATATCAG
EST: ACTTGACTCACACCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTG GAGAACTAAAGGAAACAAAAGCCTACAAGAAATGGACAAAGAAAATATCAGEST: gi|208130358|gb|GD928131.1|GD928131
genomic: ACTTGACTCACACCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTGgtaagaatat ... atttatgtagGAGAACTAAAGGAAACAAAAGCCTACAAGAAATGGACAAAGAAAATATCAG
EST: ACTTGACTCACACCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTG GAGAACTAAAGGEST: gi|16346108|gb|BI971703.1|BI971703
genomic: ACTTGACTCACACCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTGgtaagaatat ... atttatgtagGAGAACTAAAGG
EST: ACTTGACTCACTCCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTG GAGAACTAAAGGAAACAAAAGCCTACAAGAAATGGACAAAGAAAATATCAG
genomic: ACTTGACTCACACCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTGgtaagaatat ... atttatgtagGAGAACTAAAGGAAACAAAAGCCTACAAGAAATGGACAAAGAAAATATCAG
cttgggttgttcaacaatttccttgatgcctattttcctctgttcatttatgtagGAGAACTAAAGGAAACAAAAGCCTACAAGAAATGGACAAAGAAAATATCAGAAATCAAGCCACCAACTAGTCCCTTAAGAAGGAGGGCAAA
ccttgat putative branch site (score: 5)
cctattttcctctgtt CT-rich tract
ttcatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgcagttatttttacttttagcggagagattctgcatatattacttgggttgttcaacaatttccttgatgcctattttcctctgttcatttatgtagGAGAACTAAAGGAAACAAAAGCCTACAAGAAATGGACAAAGAAAATATCAGAAATCAAGCCACCAACTAGTCCCTTAAGAAGGAGGGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG