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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atatatatgctttgtgattttcaaattcatggagggtaaaatgttgtctactttttctaaatttagtggtctgatttaacattgactctttattttctagTGCTGCCATCCTTCTCTGGGAATGTTCCAGCTGCTTTGACAAAGATATTCCCTTCGGCAAAAATAACTAGACTTGGTGACTG

Basic information

species Glycine max
transcript GLYMA10G11720.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G11720.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv13s0064g00370.t01 (Vitis vinifera), 3'ss of exon 6
-----------------------------------------------------------------------atatat-atgctttgtgattttcaaattcatggagggta-aaatgttgtctactttttctaaatttagtggtctgatttaacat--tgactctttattttctagTGCTGCCATCCTTCTCTGGGAATGTTCCAGCTGCTTTGACAAAGATATTCCCTTCGGCAAAAATAACTAGACTTGGTGACTG
                                                                       | |||| ||  |   ||  |   | |  || | | | || ||| ||||| ||   |  |   ||| | |  ||||||   |  |  ||  | | | | ||  ||| ||||| || |||||||| ||||||||||  ||  | | ||||||||| ||||| ||||| |||||||||||||| || ||
gtatagttggcctttacctttgtcttttatgggttccatatccattttggtgttgagccacacattcaatgagatattattataaatgtctcatatacacaagtatgatataaaggttgtttaaagtgacaggattgaatt-tctgatcacatgtaatgcttttctttatttcagTTCTGCCTTCATTCTCTGGAAATGTTCCAGAAGCACTCAAAAAGATATTTCCTTCAGCAAATATAACTAGACTTGGGGAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctactttttctaaatttagtggtctgatttaacattgactctttattttctagTGCTGCCATCCTTCTCTGGGAATGTTCCAGCTGCTTTGACAAAGATATTCCCTTCGGCAAAAATAACTAGACTTGGTGACTG
                                        ctctttattttct  CT-rich tract
      tttttctaaatttagt  TA-rich tract