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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtttatttagatatcgtacttttgttttgctttgtctattgctttcacggagattataatggttcaactttctgggtggttcagGATCACGATGGTTCCCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTGCTAAAAGTTCCATCTTTTATGGTTGAATTTACCA

Basic information

species Glycine max
transcript GLYMA10G11610.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G11610.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os02g47150.1 (Oryza sativa), 3'ss of exon 6
gtgggtttatttagatatcgtacttttgttttgctttgtctattgctttcacggagattataatggttcaactttctgggtggttcagGATCACGATGGTTCCCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTGCTAAAAGTTCCATCTTTTATGGTTGAATTTACCA
    |||| | |  ||     | | |  |||    | |||||      |||    | || |  | | ||| ||    |     ||||||| || |||||||||||||||||||| || ||||| ||||||||||| || |||||||| || ||  | ||| |||| |||||  ||||||| ||||  |
----gtttttctc-atgctaaaatct-atttcaactagtctaac----tcaactcgctttt--ttgctcatctaatagaaaatttcagGACCATGATGGTTCCCACATCAAAGGCCTGTTGATCAACTTCATTCACTCCTTCTGGCCTTCTCTTATTAAAATTCCTTCTTTCTTGGTTGAGTTTATTA

upper sequence: GLYMA10G11610.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G021270_T02 (Zea mays), 3'ss of exon 6
gtgggtttatttagatatcgtacttttgttttgctttgtctattgctttcacggagattataatggttcaactttctgggt---ggttcagGATCACGATGGTTCCCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTGCTAAAAGTTCCATCTTTTATGGTTGAATTTACCA
    ||||    ||  | | | ||    ||||   |   ||| ||     ||  |  || |  | | |||   ||           || ||||||| ||||| |||||||| |||||| |  |||| |||||||| || || |||||||| || || || ||||||||||||||| ||||||| || |  |
----gtttggc-aggcaacat-ctccaattttatatcaactaatgaa---actcaagttttgtttgctcatgctttgacaccaaaatttagGATCATGATGGCTCCCACATTAAAGGGTTGCTGATCAACTTCATCCACTCATTCTGGCCGTCTCTTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTA

upper sequence: GLYMA10G11610.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv13s0064g00560.t01 (Vitis vinifera), 3'ss of exon 6
------------------gtgggtttatttagatatcgtacttttgttttgctttgtctattgcttt-cacgga------gattataatggttcaactttctgggtggttcagGATCACGATGGTTCCCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTGCTAAAAGTTCCATCTTTTATGGTTGAATTTACCA
                  ||     |  ||   |  || ||| || ||   ||||| | || |  |   | |        | | | | | ||| |  ||  |   |    |||||||| ||||| || ||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||||  | ||||| || |  |
gttggccaaacaattccagttttcctgctttacttgcg-actgttattggcctttgccaatagagtaatatgagtccttggttaacagtagttta-tttcttctcttacacagGATCATGATGGCTCTCACATCAAAGGACTATTGATAAATTTCATTCATTCATTCTGGCCTTCACTGCTAAAAATTCCATCTTTCTTAGTTGAGTTCATAA

upper sequence: GLYMA10G11610.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S109_208V6.1 (Physcomitrella patens), 3'ss of exon 8
---------------------------------------------------------------------------------------gtgggtttatttagatatcgtacttttgtttt-gctttgtctattgctttcacggagattataatggttcaactttctgggtggttcagGATCACGATGGTTCCCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTGCTAAAAGTTCCATCTTTTATGGTTGAATTTACCA
                                                                                        ||    |  ||||||    |  || |  | | ||  || ||     ||    | | | |  |     |  |  || |  ||    |||||||||||||| ||||||||||||||  | ||||| ||||| ||||| || |||||||| |||||||| ||  |||| || ||| | || || || | ||
gtgtgccatttctgccgacattaaacatgattgtgtttcatgtaactgtggaccaagtatctctcttaatcttttggattctcttgcatgttcctgcttagattatctctttatactgtagcgctggctgccagttgtcggtacaatgcatgaccttcagcttgtatgtt-cgcagGATCACGATGGGTCCCACATCAAAGGATTGTTGATTAACTTTATTCACTCTTTCTGGCCGTCACTGCTCAAGATTCCTTCGTTTCTTGTGGAGTTCATCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208215428|gb|GE012457.1|GE012457
EST:     CAAGCGTGAAGTCTTTGAGATATGGTCATTTGATGATTATGGCTGATCAG                         GATCACGATGGTTCCCACATCAAAGGG
genomic: CAAGCGTGAAGTCTTTGAGATATGGTCATTTGATGATTATGGCTGATCAGgtgggtttat ... ggtggttcagGATCACGATGGTTCCCACATCAAAGGG
EST: gi|208210421|gb|GE015612.1|GE015612
EST:     CAAGTGTGAAGTCTTTGAGATATGGTCATTTGATGATTATGGCTGATCAG                         GATCACGATGGTTCCCACATCAAAGGGCTATTGATAAACTTCATTCATTCG
genomic: CAAGCGTGAAGTCTTTGAGATATGGTCATTTGATGATTATGGCTGATCAGgtgggtttat ... ggtggttcagGATCACGATGGTTCCCACATCAAAGGGCTATTGATAAACTTCATTCATTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgtctattgctttcacggagattataatggttcaactttctgggtggttcagGATCACGATGGTTCCCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTGCTAAAAGTTCCATCTTTTATGGTTGAATTTACCA
                     agattataat  TA-rich tract