1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tctaattcaaaacaccaactcttaaatcatggtggtcttgtgatttcattacattattatctgatgattttctaatagtatgttgctaaccatttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTTTACCAGAAAGCCTCCAAAGTATGAGCGATTCATTCGTCCTACAGGATT
species | Glycine max |
transcript | GLYMA10G10000.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTEST: gi|9987770|gb|BE661878.1|BE661878
genomic: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: AGTGGCTGAAGATGAAATGTTCAAGGTGGTCCGTACTGGTAAAAGAAAGA CCAAGCAATGGAAGAGGATGGNTACAAAAGCT-CATTTGGTGGGCCTGGGTEST: gi|15813808|gb|BI786083.1|BI786083
genomic: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTEST: gi|208085267|gb|GD884055.1|GD884055
genomic: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTEST: gi|14205367|gb|BG839045.1|BG839045
genomic: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA CCAAGCAATGGAAGAAGATGGTTACAAAAAGCTACATTTGTTTGGGGCCTGEST: gi|151397650|gb|EV267523.1|EV267523
genomic: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAA-GCTACATTTGTT-GGG-CCTG
EST: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTEST: gi|151408011|gb|EV277826.1|EV277826
genomic: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTEST: gi|24205496|gb|BU964749.1|BU964749
genomic: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTEST: gi|298177257|gb|HO023504.1|HO023504
genomic: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTEST: gi|14206051|gb|BG839729.1|BG839729
genomic: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: TGGCTGAAAGATGAAATGTTCAAAGTGGTCCGTACTGGGTAAAAGAAAGA CCNAGCAATGGAAGAAGATGGTTACAAAAGCTACATTTGTTGGGCCTGGGTEST: gi|9899604|gb|BE608572.1|BE608572
genomic: TGGCTGAA-GATGAAATGTTCAAAGTGGTCCGTACTGG-TAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGG-T
EST: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTEST: gi|208284717|gb|GE084215.1|GE084215
genomic: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: TTCAAAGTGGTCCGTACTGGTAAAAGAAAGA CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: TTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
tcattacattattatctgatgattttctaatagtatgttgctaaccatttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTTTACCAGAAAGCCTCCAAAGTATGAGCGATTCATTCGTCCTACAGGATT
tgctaac putative branch site (score: 1)
ccatttttc CT-rich tract
attttctaatagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaattcaaaacaccaactcttaaatcatggtggtcttgtgatttcattacattattatctgatgattttctaatagtatgttgctaaccatttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTTTACCAGAAAGCCTCCAAAGTATGAGCGATTCATTCGTCCTACAGGATT
- - - -caaaaca
- - - - - - - ccaactc
- - - - - - - - - - - - - - -tggtggt
- - - - - - - - - - - - - - - - - - cttgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct