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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggatgtttccatttacacctcccactctcatgtgttgcccacacatttgtatttcaatttttttataaaaaagttataaaataacattgtaaactgatgttgcagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACGCAAATAAGGGTGTAAATATCATTAAAGGAACTGTTGCTGTTGGATTCAC

Basic information

species Glycine max
transcript GLYMA10G07820.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209718426|gb|BW666238.1|BW666238
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTA
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggat ... gatgttgcagTGCCACGACTTTTTACGGCTGGTA
EST: gi|193493627|gb|FK458809.1|FK458809
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggat ... gatgttgcagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
EST: gi|192330173|gb|FK019798.1|FK019798
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggat ... gatgttgcagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
EST: gi|193551352|gb|FK507591.1|FK507591
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggat ... gatgttgcagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
EST: gi|151411030|gb|EV280841.1|EV280841
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggat ... gatgttgcagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
EST: gi|21255678|gb|BQ452566.1|BQ452566
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggat ... gatgttgcagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
EST: gi|254344724|gb|GR851314.1|GR851314
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggat ... gatgttgcagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
EST: gi|192327629|gb|FK021306.1|FK021306
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCATGACTTTTT
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggat ... gatgttgcagTGCCACGACTTTTT
EST: gi|192328367|gb|FK020078.1|FK020078
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAA
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggat ... gatgttgcagTGCCACGACTTTTTACGGCTGGTATAGCTGAA
EST: gi|254340648|gb|GR854376.1|GR854376
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAATTTCTATGAGGGATATTAC
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggat ... gatgttgcagTGCCACGACTTTTTACGGCTGGTATAGCTGAATT-CTATGAGGGATATTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttcaatttttttataaaaaagttataaaataacattgtaaactgatgttgcagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACGCAAATAAGGGTGTAAATATCATTAAAGGAACTGTTGCTGTTGGATTCAC
     aatttttttataaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtggatgtttccatttacacctcccactctcatgtgttgcccacacatttgtatttcaatttttttataaaaaagttataaaataacattgtaaactgatgttgcagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACGCAAATAAGGGTGTAAATATCATTAAAGGAACTGTTGCTGTTGGATTCAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT