1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttgttgtccttggcatttctcatcatggtttagttttttcacctgagcagtcttctttgcaagatatacctgatgtactctttctttctagtagGTACCTGTTGATGTTTTTGAAGGTATTACTGATGAAGGTGCTGCAAAGGTTGTTGATGGTTTGGCTCTCAAAGTGGCTGATAGAAATAAGTCGATTGAAC
species | Glycine max |
transcript | GLYMA10G04480.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGCAGAGAAATTTCCGGACATGATTATAAAG GTACCTGTTGATGTTTTTGAAGGTATTACTGATGAAGGTGCTGCAAAGGTTEST: gi|17518793|gb|BM187835.1|BM187835
genomic: TTGCAGAGAAATTTCCGGACATGATTATAAAGgtttgttgtc ... tttctagtagGTACCTGTTGATGTTTTTGAAGGTATTACTGATGAAGGTGCTGCAAAGGTT
EST: GAACCAGCATTGAAGACCTTGCAGAGAAATTTCCGGACATGATTATAAAG GTACCTGTTGATGTTTTTGAAGGTATTACTGATGAAGGTGCTGCAAAGGTTEST: gi|61241640|gb|DN591031.1|DN591031
genomic: GAACCAGCATTGAAGACCTTGCAGAGAAATTTCCGGACATGATTATAAAGgtttgttgtc ... tttctagtagGTACCTGTTGATGTTTTTGAAGGTATTACTGATGAAGGTGCTGCAAAGGTT
EST: GAACCAGCATTGAAGACCTTGCAGAGAAATTTCCGGACATGATTATAAAG GTACCTGTTGATGTTTTTGAAGGTATTACTGATGAAGGTGCTGCAAAGGTTEST: gi|254325002|gb|GR834427.1|GR834427
genomic: GAACCAGCATTGAAGACCTTGCAGAGAAATTTCCGGACATGATTATAAAGgtttgttgtc ... tttctagtagGTACCTGTTGATGTTTTTGAAGGTATTACTGATGAAGGTGCTGCAAAGGTT
EST: CCAGCATTGAAGACCTTGCAGAGAAATTTCCGGACATGATTATAAAG GTACCTGTTGATGTTTTTGAAGGTATTACTGATGAAGGTGCTGCAAAGGTTEST: gi|15000418|gb|BI321232.1|BI321232
genomic: CCAGCATTGAAGACCTTGCAGAGAAATTTCCGGACATGATTATAAAGgtttgttgtc ... tttctagtagGTACCTGTTGATGTTTTTGAAGGTATTACTGATGAAGGTGCTGCAAAGGTT
EST: GAACCAGCATTGAAGACCTTGCAGAGAAATTTCCGGACATGATTATAAAG GTACCTGTTGATGTTTTTGAAGGTATTACTGATGAAGGTGCTGCAAAGGTTEST: gi|151397308|gb|EV267181.1|EV267181
genomic: GAACCAGCATTGAAGACCTTGCAGAGAAATTTCCGGACATGATTATAAAGgtttgttgtc ... tttctagtagGTACCTGTTGATGTTTTTGAAGGTATTACTGATGAAGGTGCTGCAAAGGTT
EST: GAACCAGCATTGAAGACCTTGCAGAGAAATTTCCGGACATGATTATAAAG GTACCTGTTGATGTTTTTGAATGTATTACTGATGAAAGTGCTGCAAAGGTT
genomic: GAACCAGCATTGAAGACCTTGCAGAGAAATTTCCGGACATGATTATAAAGgtttgttgtc ... tttctagtagGTACCTGTTGATGTTTTTGAAGGTATTACTGATGAAGGTGCTGCAAAGGTT
cacctgagcagtcttctttgcaagatatacctgatgtactctttctttctagtagGTACCTGTTGATGTTTTTGAAGGTATTACTGATGAAGGTGCTGCAAAGGTTGTTGATGGTTTGGCTCTCAAAGTGGCTGATAGAAATAAGTCGATTGAAC
acctgat putative branch site (score: 4)
tgtactctttctttct CT-rich tract
aagatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttgtccttggcatttctcatcatggtttagttttttcacctgagcagtcttctttgcaagatatacctgatgtactctttctttctagtagGTACCTGTTGATGTTTTTGAAGGTATTACTGATGAAGGTGCTGCAAAGGTTGTTGATGGTTTGGCTCTCAAAGTGGCTGATAGAAATAAGTCGATTGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT