Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgatactcgttgttgttgttattattatggtggtggttgttgtcattgttattattatggttggtgctattctgaattggccactatgtatctgatgtagAATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCAATTAACCAAGGTTACAATTCCTATCCTACAAATCCTGTCTATGCATCTC

Basic information

species Glycine max
transcript GLYMA10G03910.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8401898|gb|BE057532.1|BE057532
EST:     AGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAG                         AATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCA
genomic: AGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAGgtatttcatg ... tctgatgtagAATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCA
EST: gi|254323299|gb|GR840104.1|GR840104
EST:     AGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAG                         AATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCA
genomic: AGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAGgtatttcatg ... tctgatgtagAATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCA
EST: gi|17963169|gb|BM269921.1|BM269921
EST:     AGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAG                         AATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCA
genomic: AGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAGgtatttcatg ... tctgatgtagAATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCA
EST: gi|31460923|gb|CD402951.1|CD402951
EST:     AGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAG                         AATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCA
genomic: AGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAGgtatttcatg ... tctgatgtagAATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCA
EST: gi|207753903|gb|GD722409.1|GD722409
EST:     AGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAG                         AATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCA
genomic: AGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAGgtatttcatg ... tctgatgtagAATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCA
EST: gi|51337757|gb|CO981623.1|CO981623
EST:     AGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAG                         AATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCA
genomic: AGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAGgtatttcatg ... tctgatgtagAATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCA
EST: gi|31469424|gb|CD411452.1|CD411452
EST:     AGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAG                         AATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGCTTCA
genomic: AGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAGgtatttcatg ... tctgatgtagAATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCA
EST: gi|10845762|gb|BF071181.1|BF071181
EST:     AGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAG                         AATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCA
genomic: AGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAGgtatttcatg ... tctgatgtagAATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCA
EST: gi|17401691|gb|BM178473.1|BM178473
EST:     AGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAG                         AATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCA
genomic: AGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAGgtatttcatg ... tctgatgtagAATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCA
EST: gi|209708701|gb|BW678882.1|BW678882
EST:     AGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAG                         AATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCA
genomic: AGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAGgtatttcatg ... tctgatgtagAATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttattattatggttggtgctattctgaattggccactatgtatctgatgtagAATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCAATTAACCAAGGTTACAATTCCTATCCTACAAATCCTGTCTATGCATCTC
                                            atctgat  putative branch site (score: 4)
     attattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgatactcgttgttgttgttattattatggtggtggttgttgtcattgttattattatggttggtgctattctgaattggccactatgtatctgatgtagAATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGTTCAATTAACCAAGGTTACAATTCCTATCCTACAAATCCTGTCTATGCATCTC

- - - - gttgttg
- - - - - - - - - - - - - -tggtggt
- - - - - - - - - - - - - - - - - - -tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccacta