1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaaatctgtaggtagtctagacaagctgctcttttgtgccttgggccctgatattattaaagtatccctgcttagcaattaactcgtagcctggcttcagGTGCACTAGGATCAACATGGACAGCAATCGATCAGGAGTAAGAGACAATATTCAACTTTTGCTTTGCACAATTGCAGAGTTGGCTCTTTACAGCACATGA
species | Glycine max |
transcript | GLYMA10G02550.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATATTGTGGCACGGCCACTTCTTAGCCCTGTTGGACTTCCTTTACGTCCG GTGCACTAGGATCAACATGGACAGCAATCGATCAGGAGTAAGGGACAATAEST: gi|193588851|gb|FK541453.1|FK541453
genomic: ATATTGTGGCACGGCCACTTCTTAGCCCTGTTGGACTTCCTTTACGTCCGgtatgtatgg ... ctggcttcagGTGCACTAGGATCAACATGGACAGCAATCGATCAGGAGTAAGAGACAATA
EST: ATATTGTGGCACGGCCACTTCTTAGCCCTGTTGGACTTCCTTTACGTCCG GTGCACTAGGATCAACATGGACAGCAATCGATCAGGAGTAAGAGACAATATEST: gi|193667290|gb|FK610970.1|FK610970
genomic: ATATTGTGGCACGGCCACTTCTTAGCCCTGTTGGACTTCCTTTACGTCCGgtatgtatgg ... ctggcttcagGTGCACTAGGATCAACATGGACAGCAATCGATCAGGAGTAAGAGACAATAT
EST: ATATTGTGGCACGGCCACTTCTTAGCCCTGTTGGACTTCCTTTACGTCCG GTGCACTAGGATCAACATGGACAGCAATCGATCAGGAGTAAGAGACAATATEST: gi|193657623|gb|FK607208.1|FK607208
genomic: ATATTGTGGCACGGCCACTTCTTAGCCCTGTTGGACTTCCTTTACGTCCGgtatgtatgg ... ctggcttcagGTGCACTAGGATCAACATGGACAGCAATCGATCAGGAGTAAGAGACAATAT
EST: ATATTGTGGCACGGCCACTTCTTAGCCCTGTTGGACTTCCTTTACGTCCG GTGCACTAGGATCAACATGGACAGCAATCGATCAGGAGTAAGAGACAATATEST: gi|208183379|gb|GD981489.1|GD981489
genomic: ATATTGTGGCACGGCCACTTCTTAGCCCTGTTGGACTTCCTTTACGTCCGgtatgtatgg ... ctggcttcagGTGCACTAGGATCAACATGGACAGCAATCGATCAGGAGTAAGAGACAATAT
EST: ATATTGTGGCACGGCCACTTCTTAGCCCTGTTGGACTTCCTTTACGTCCG GTGCACTAGGATCAACATGGACAGCAATCGATCTAGGTAGTTAAGTAGTAC
genomic: ATATTGTGGCACGGCCACTTCTTAGCCCTGTTGGACTTCCTTTACGTCCGgtatgtatgg ... ctggcttcagGTGCACTAGGATCAACATGGACAGCAATCGATC-AGG-AGT-AAG-AG-AC
ccctgatattattaaagtatccctgcttagcaattaactcgtagcctggcttcagGTGCACTAGGATCAACATGGACAGCAATCGATCAGGAGTAAGAGACAATATTCAACTTTTGCTTTGCACAATTGCAGAGTTGGCTCTTTACAGCACATGA
aattaac putative branch site (score: 2)
atattattaaagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatctgtaggtagtctagacaagctgctcttttgtgccttgggccctgatattattaaagtatccctgcttagcaattaactcgtagcctggcttcagGTGCACTAGGATCAACATGGACAGCAATCGATCAGGAGTAAGAGACAATATTCAACTTTTGCTTTGCACAATTGCAGAGTTGGCTCTTTACAGCACATGA
- - - - - - - - - - - aagctgc
- - - - - - - - - - - - - - - - tttgtgc
- - - - - - - - - - - - - - - - - - - - - - - cctgata