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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagtcccttttccttcttaattcttttacttatcctctctcccagtggaaactgcgcgtgtgtgtggtccagtttttgtaacggttacttgcttgttactagGTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCACCTCCTTCCTTCTGCTAACATATGCCAAATACTTGACCCAATCCCATAT

Basic information

species Glycine max
transcript GLYMA10G02130.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02130.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv07s0005g00740.t01 (Vitis vinifera), 3'ss of exon 6
gtgaagtcccttttccttcttaattcttttacttatcctctctcccagtggaaactgcgcgtgtgtgtggtccagtttttgtaacggttacttgcttgttactagGTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCACCTCCTTCCTTCTGCTAACATATGCCAAATACTTGACCCAATCCCATAT
                       | || || | |  ||| |||    || | ||| ||   | |   || |   ||  ||  |||    |    | ||  || ||||||| | || |||||||||||||| ||||||||||||||||| || ||||| || ||||| ||  |||| ||||| || ||||| ||   | |||| | 
----------------------gtcctcttccct-ccctttctgtgggttgtaacggctacttttcctgttttggtgctt--aacaacaa--aacatgacac-agGTGGGTTGCTGTTCAAGATGAGTGACAGCAACATGCAGTATGTGACCTCCACTTCATTCCTGCTTGTAACCTATGCAAAGTACTTAACTTCAGCCCACAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336243|gb|CO980109.1|CO980109
EST:     CACTCAATATACCCCAG                         GTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCA
genomic: CACTCAATATACCCCAGgtgaagtccc ... ttgttactagGTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCA
EST: gi|8402468|gb|BE058102.1|BE058102
EST:     GGAACCTCTTTTTCTTCCACTCAATATACCCCAG                         GTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCA
genomic: GGAACCTCTTTTTCTTCCACTCAATATACCCCAGgtgaagtccc ... ttgttactagGTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCA
EST: gi|9439791|gb|BE440305.1|BE440305
EST:     CTGTTCTCTAATTCCTGGAACCTCTTTTTCTTCCACTCAATATACCCCAG                         GTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCA
genomic: CTGTTCTCTAATTCCTGGAACCTCTTTTTCTTCCACTCAATATACCCCAGgtgaagtccc ... ttgttactagGTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCA
EST: gi|26058641|gb|CA801555.1|CA801555
EST:     CTGTTCTCTAATTCCTGGAACCTCTTTTTCTTCCACTCAATATACCCCAG                         GTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCA
genomic: CTGTTCTCTAATTCCTGGAACCTCTTTTTCTTCCACTCAATATACCCCAGgtgaagtccc ... ttgttactagGTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaactgcgcgtgtgtgtggtccagtttttgtaacggttacttgcttgttactagGTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCACCTCCTTCCTTCTGCTAACATATGCCAAATACTTGACCCAATCCCATAT
                            ttgtaac  putative branch site (score: 2)
                                        cttgctt  putative PPT
                         tttttgtaa  TA-rich tract