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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgcttctcatatcattcaaaagagtttttctcttcttcctgtaagctatgtaattaagaaccaactcttacttcatgtagGCACTTGAATGCTTCCATTAAAGAAAACGAGTCAAATAATGCATTGGATTCAAATGGTTCTGTGGTTGGCTTTCCTCCCAAGCAGTCCTCATATTCATGC

Basic information

species Glycine max
transcript GLYMA09G41380.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7795344|gb|AW780803.1|AW780803
EST:     GAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAG                         GCACTTGAATGCTTCCATTAAAGAAAACGAGTCAAATAATGCATTGGATTC
genomic: GAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAGgtttgtgctt ... cttcatgtagGCACTTGAATGCTTCCATTAAAGAAAACGAGTCAAATAATGCATTGGATTC
EST: gi|192330256|gb|FK020556.1|FK020556
EST:     A-GATGGTTTATTTGGGTTTTGATT-GCATAGTGATGGCAGTGGTCAAAG                         -CACTTGA-TGCTTCCATTAAAGAAAA
genomic: AAGATGGTTTATTTGG-TTTTGATTTGCATAGTGATGGCAGTGGTCAAAGgtttgtgctt ... cttcatgtagGCACTTGAATGCTTCCATTAAAGAAAA
EST: gi|7028643|gb|AW458426.1|AW458426
EST:     GAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAG                         GCACTTGAATGCTTCCATTAAAGAAAACGAGTCAAATAATGCATTGGATTC
genomic: GAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAGgtttgtgctt ... cttcatgtagGCACTTGAATGCTTCCATTAAAGAAAACGAGTCAAATAATGCATTGGATTC
EST: gi|11690173|gb|BF597849.1|BF597849
EST:     GATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAG                         GCACTTGAATGCTTCCATTAAAGAAAACGAGTCAAATAATGCATTGGATTC
genomic: GATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAGgtttgtgctt ... cttcatgtagGCACTTGAATGCTTCCATTAAAGAAAACGAGTCAAATAATGCATTGGATTC
EST: gi|51337090|gb|CO980956.1|CO980956
EST:     GAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAG                         GCACTTGAATGCTTCCATTAAAGAAAACGAGTCAAATAATGCATTGGATTC
genomic: GAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAGgtttgtgctt ... cttcatgtagGCACTTGAATGCTTCCATTAAAGAAAACGAGTCAAATAATGCATTGGATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctcttcttcctgtaagctatgtaattaagaaccaactcttacttcatgtagGCACTTGAATGCTTCCATTAAAGAAAACGAGTCAAATAATGCATTGGATTCAAATGGTTCTGTGGTTGGCTTTCCTCCCAAGCAGTCCTCATATTCATGC
                                       ctcttac  putative branch site (score: 3)
                                       ctcttacttc  CT-rich tract
                     tatgtaattaagaa  TA-rich tract