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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttttcttcattctttcccctttagtcttgtgctcaattttgtaaattttaactgactttgtaagacatctatcccagGTGAACGAGGAAGAAGCCTCCCTCTTTGACATCCTCTGGTTATTACTTGCAAGTGTTATATTTGTGCCAATATTTCAAAAAATCCCTGGAG

Basic information

species Glycine max
transcript GLYMA09G39770.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39770.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G058948_T01 (Zea mays), 3'ss of exon 2
-----------------------------------------gtttgtttttcttcattctttcccctttagtcttgtg---ctcaattt---tgtaaattttaactgactttgtaagacatctatcccagGTGAACGAGGAAGAAGCCTCCCTCTTTGACATCCTCTGGTTATTACTTGCAAGTGTTATATTTGTGCCAATATTTCAAAAAATCCCTGGAG
                                          ||||| |   |  | |  |   |   |  | |  ||   || |  ||   |||||||||      |||  || |     |||| | |||| || ||||||||||| || || || ||||| || |  ||  | ||||| |||||||| ||||| ||| ||||||| |||||||||||||
gtacaatttcctcatctgaacttgctcatcttctgatttcattttgtgtacttcgaatgatattcaactgttatgatgaaacttagcttgcatgtaaatttccttacactc-gtcatttccctattc-agGTAAATGAGGAAGAAGCTTCACTTTTCGACATACTGTATTTGCTTCTTGCCAGTGTTATTTTTGTACCATTATTTCAGAAAATCCCTGGAG

upper sequence: GLYMA09G39770.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G01790.1 (Arabidopsis thaliana), 3'ss of exon 3
--------gtttgtttttcttcattctttcccctttagtcttgtgctcaattttgtaaattttaactgactttgtaagacatctatcc-----cagGTGAACGAGGAAGAAGCCTCCCTCTTTGACATCCTCTGGTTATTACTTGCAAGTGTTATATTTGTGCCAATATTTCAAAAAATCCCTGGAG
          ||||| || ||  || ||| |  ||  |   ||     |||| | |  | | ||  |  |    | | || |    |       |||| || ||||||||||| |||||||||||| |  | |||||| | || ||||| || |||||||||||  ||||||| ||||| |||||||
gtatgaacaattgttcttgtttttttttttcttttacgaagtgca---aattgtatggaatgtactttgcaggctgaaactttctgcaattaatagGTCAATGAGGAAGAAGCTTCCCTCTTTGACTTTTTGTGGTTACTGCTAGCAAGCGTCATATTTGTGCCTCTATTTCAGAAAATTCCTGGAG

upper sequence: GLYMA09G39770.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 1
gtttgtttttcttcattctttcccctttagtcttgtgctcaattttgtaaattttaactgactttgtaagacatctatcccagGTGAACGAGGAAGAAGCCTCCCTCTTTGACATCCTCTGGTTATTACTTGCAAGTGTTATATTTGTGCCAATATTTCAAAAAATCCCTGGAG
||    || | ||  |||   |   ||| | ||   |  |||  ||        |  || |  |       | | | || ||| |||| ||||||||||| ||||| ||||||||  | |||||| | || |||||||||||||||||||| ||||| || ||||| |||||||
gtccacttatattagttc---caattttgggctaaaggccaacatttagtgcactttctcatatctctttccttttctctcagATGAATGAGGAAGAAGCTTCCCTTTTTGACATGTTATGGTTACTGCTAGCAAGTGTTATATTTGTGCCTATATTCCAGAAAATTCCTGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtcttgtgctcaattttgtaaattttaactgactttgtaagacatctatcccagGTGAACGAGGAAGAAGCCTCCCTCTTTGACATCCTCTGGTTATTACTTGCAAGTGTTATATTTGTGCCAATATTTCAAAAAATCCCTGGAG
                           aactgac  putative branch site (score: 2)
                                             tctatccc  putative PPT
          tcaattttgtaaattt  TA-rich tract