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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatcttctgctatttaaaataactatcactttaaaacttagcttgatatttggatttcctagctgttcttgatttagagttatttttggttttgattttctattttaatgttcatgtgaattttggcagAAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTTTCTATTGTGATGATGACCCTTTATCCAGTACTAATAGCTCCACTCTTCA

Basic information

species Glycine max
transcript GLYMA09G39150.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39150.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv15s0046g02040.t01 (Vitis vinifera), 3'ss of exon 6
---gtaaaatcttctgctatttaaaataacta----tcactt-taaaacttagct-tgatatt---------tggatttcctagctgttcttgatttagagttatttttggttttg------attttctattt--------taatgttcatgtgaattttggcagAAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTTTCTATTGTGATGATGACCCTTTATCCAGTACTAATAGCTCCACTCTTCA
     | ||| | ||  |||| |||| | |||    | | || ||  | |||| | |||| ||         |   | || ||  | |      | |   | | |  |   |  ||       || |||| |          ||||||||| ||  |  ||||||||||||||||| || |||||||||||||||||||  |||| ||||  ||| ||||||||||||||||| || |||||  | |||||||| ||||| ||||
gtaacataatttgctaatattgaaaacagctagaggttatttgtagcatttagttgtgattttccacatgatttagtctcttatttttctgcattcttctgctttcctcattactgtcaagcgttctctaatagtgactaacaatgttcatttgcttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTGTCTATTGTGATGATGACACTGTATCCTATTCTAATAGCCCCACTTTTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207843659|gb|GD813872.1|GD813872
EST:     CTGTAATAATTGGTCCGCCTATTGTGGCTGCAATCATTGTAATAGTACAG                         AAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTT
genomic: CTGTAATAATTGGTCCACCTATTGTGGCTGCAATCATTGTAATAGTACAGgtaaaatctt ... attttggcagAAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTT
EST: gi|193463989|gb|FK428319.1|FK428319
EST:     CTGTAATAATTGGTCCACCTATTGTGGCTGCAATCATTGTAATAGTACAG                         AAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTT
genomic: CTGTAATAATTGGTCCACCTATTGTGGCTGCAATCATTGTAATAGTACAGgtaaaatctt ... attttggcagAAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTT
EST: gi|192302658|gb|FG994896.1|FG994896
EST:     CTGTAATAATTGGTCCACCTATTGTGGCTGCAATCATTGTAATAGTACAG                         AAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTT
genomic: CTGTAATAATTGGTCCACCTATTGTGGCTGCAATCATTGTAATAGTACAGgtaaaatctt ... attttggcagAAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTT
EST: gi|207689928|gb|GD672433.1|GD672433
EST:     CTGTAATAATTGGTCCACCTATTGTGGCTGCAATCATTGTAATAGTACAG                         AAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTT
genomic: CTGTAATAATTGGTCCACCTATTGTGGCTGCAATCATTGTAATAGTACAGgtaaaatctt ... attttggcagAAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTT
EST: gi|151398881|gb|EV268752.1|EV268752
EST:     GTAATAATTTGGTCCACCTATTGTGGCTGCAATCATTTGTAATAGTACAG                         A
genomic: GTAATAA-TTGGTCCACCTATTGTGGCTGCAATCA-TTGTAATAGTACAGgtaaaatctt ... attttggcag-
EST: gi|151398881|gb|EV268752.1|EV268752
EST:     GTAATAATTTGGTCCACCTATTGTGGCTGCAATCATTTGTAATAGTACAG                         A
genomic: GTAATAA-TTGGTCCACCTATTGTGGCTGCAATCA-TTGTAATAGTACAGgtaaaatctt ... attttggcag-
EST: gi|5175463|gb|AI759796.1|AI759796
EST:     GTAATAATTGGTCCACCTA-TGTGGNCTGCAATCA-TGTAAATAGTACAG                         AAGGGAGGTCCATACTTGGCCATCTATCTTGGGGTTTTTACGTTGGGTCTT
genomic: GTAATAATTGGTCCACCTATTGTGG-CTGCAATCATTGT-AATAGTACAGgtaaaatctt ... attttggcagAAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTT
EST: gi|5175455|gb|AI759788.1|AI759788
EST:     ATTGGTCCACCTA-TGATGGCTGCAATCA-TGTAAATAGTACAG                         -AAGGAGGATCCATACTTGGCCATCTATCTATGAG-TTTTACGTTTGGTCT
genomic: ATTGGTCCACCTATTG-TGGCTGCAATCATTGT-AATAGTACAGgtaaaatctt ... attttggcagAAAGGAGG-TCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagagttatttttggttttgattttctattttaatgttcatgtgaattttggcagAAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTTTCTATTGTGATGATGACCCTTTATCCAGTACTAATAGCTCCACTCTTCA
                            ttttaat  putative branch site (score: 3)
     ttatttttggttttga  TA-rich tract