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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgttctttttcagaagacattttgtcttgctgtatctgttctcattaaatttggctttagaagttctgtttacctttgtaattagggacattgttaagtgcatgtttagtgagttttagactaaataaatggatgacaactttcttgccagCTTCTTTTGAATTGATGAGAAAGGAACAACATAAAGCTTTCCAAGAAAAGCATAAGTTGAACCCGGACAAGAATAACGACGATTTTGACATAACTTCACT

Basic information

species Glycine max
transcript GLYMA09G39120.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39120.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv15s0046g02270.t01 (Vitis vinifera), 3'ss of exon 5
gtaattgttctttttcagaagacattttgtcttgctgtatctgttctcattaaatttggctttagaagttctgtttacctttg-taattagggacattgttaagtgcatgtttagtgagttttagactaaataaatggatgacaactttcttgccagCTTCTTTTGAATTGATGAGAAAGGAACAACATAAAGCTTTCCAAGAAAAGCATAAGTTGAACCCGGACAAGAATAACGACGATTTTGACATAACT-TCACT
                                |  ||| | |  ||||  || ||||     |||||     |  | |||||| |  |   |  |  |      ||  | |  | ||  ||  |       | ||    | | ||||||| |  |||  || ||||| |||||||| ||||||||||| ||||| ||||| || ||||| || ||||| || |||||| |||| |  |||| || |     | | || 
-------------------------------gtaatgtgtgtcgtctc-ctagatttcctggtagaatgcaagccttcctttgcttctctagttcggtcagtgatgattttgcactggattgaacttgcttttaacatttaataactttcctctcagTATCCTTTGAGTTGATGAGGAAGGAACAACAAAAAGCATTCCAGGAGAAGCAGAATTTGAATCCAGACAAGCATAAAGGTGATTCTGTCCCGGATGTTAC-


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgcatgtttagtgagttttagactaaataaatggatgacaactttcttgccagCTTCTTTTGAATTGATGAGAAAGGAACAACATAAAGCTTTCCAAGAAAAGCATAAGTTGAACCCGGACAAGAATAACGACGATTTTGACATAACTTCACT
                      gactaaa  putative branch site (score: 2)
                                           ctttcttgcc  putative PPT
                 ttttagactaaataaa  TA-rich tract