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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agatagctataacaatatataagttgataatttagtttgtaaaatttctgcaaactgattggttgatctctgcgtttcctcctattgacacaaacaatagGCTGTTTTGGATGTACGCGTTGAGATTTTGGCAACTGTAGGCGAAGATGGAGTTACTCGTTGGCTTGAATAGAGTGATTGTAGGTCTGTAATACTCAAAA

Basic information

species Glycine max
transcript GLYMA09G39090.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10847909|gb|BF070497.1|BF070497
EST:     TAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCA                         GCTGTTTTGGATGTACGCGTTGAGATTTTGGCAACTGTAGGCGAAGATGGA
genomic: TAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCAgtaagttctc ... caaacaatagGCTGTTTTGGATGTACGCGTTGAGATTTTGGCAACTGTAGGCGAAGATGGA
EST: gi|12689553|gb|BG155889.1|BG155889
EST:     TAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCA                         GCTGTTTTGGATGTACGCGTTGAGATTTTGGCAACTGTAGGCGAAGATGGA
genomic: TAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCAgtaagttctc ... caaacaatagGCTGTTTTGGATGTACGCGTTGAGATTTTGGCAACTGTAGGCGAAGATGGA
EST: gi|15814169|gb|BI786444.1|BI786444
EST:     TAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCA                         GCTGTTTTGGATGTACGCGTTGAGATTTTGGCAACTGTAGGCGAAGATGGA
genomic: TAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCAgtaagttctc ... caaacaatagGCTGTTTTGGATGTACGCGTTGAGATTTTGGCAACTGTAGGCGAAGATGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgcaaactgattggttgatctctgcgtttcctcctattgacacaaacaatagGCTGTTTTGGATGTACGCGTTGAGATTTTGGCAACTGTAGGCGAAGATGGAGTTACTCGTTGGCTTGAATAGAGTGATTGTAGGTCTGTAATACTCAAAA
                                     tattgac  putative branch site (score: 2)
                                              aaacaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agatagctataacaatatataagttgataatttagtttgtaaaatttctgcaaactgattggttgatctctgcgtttcctcctattgacacaaacaatagGCTGTTTTGGATGTACGCGTTGAGATTTTGGCAACTGTAGGCGAAGATGGAGTTACTCGTTGGCTTGAATAGAGTGATTGTAGGTCTGTAATACTCAAAA

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