1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgtagctgcatatcaagaaaaccagttagtttttttttttgcgtgacatgctttatctttgtaaaaagttgttgacgacagcactgtgttcatggtgaagGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCACTGGGAAACTTGAGCTGGAACTGATGTACAAAGTACAGATGCAATGCTATGAGGATGCTA
species | Glycine max |
transcript | GLYMA09G38530.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCAG -TAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCACTGGGAAACTTEST: gi|7285356|gb|AW597843.1|AW597843
genomic: AGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCAGgtatcctttg ... catggtgaagGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCACTGGGAAACTT
EST: AGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCAG GTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCACTGGGAAACTTEST: gi|298189880|gb|HO038283.1|HO038283
genomic: AGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCAGgtatcctttg ... catggtgaagGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCACTGGGAAACTT
EST: AGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCAG GTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCACTGGGAAA
genomic: AGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCAGgtatcctttg ... catggtgaagGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCACTGGGAAA
acatgctttatctttgtaaaaagttgttgacgacagcactgtgttcatggtgaagGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCACTGGGAAACTTGAGCTGGAACTGATGTACAAAGTACAGATGCAATGCTATGAGGATGCTA
tgttgac putative branch site (score: 3)
tttatctttgtaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtagctgcatatcaagaaaaccagttagtttttttttttgcgtgacatgctttatctttgtaaaaagttgttgacgacagcactgtgttcatggtgaagGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCACTGGGAAACTTGAGCTGGAACTGATGTACAAAGTACAGATGCAATGCTATGAGGATGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - tgcatat
- - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - -tgcgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtgtt