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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaacaaaatcaagattattatcattattatatggatgtctctcactagtctacatccatacttttctgctgacacctggggggactctttgctttataattttcagaaaattgaatttcttacatgataataattatttgtagGTCCCTGTTCGACACTTGGTATTTATGGTTCATGGGATTGGTCAAAGATTGGAAAAGTCCAATTTGGTTGATGATGTGGGCAATTTCCGGCATATTACAG

Basic information

species Glycine max
transcript GLYMA09G36920.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G36920.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S74_64V6.1 (Physcomitrella patens), 3'ss of exon 7
----gtatgtaacaaaatcaagattattatcatta----ttatatggatgtctctcactagtctacatccatacttttctgct-gacacctggggg---------gactctttgctttata---------------attttcagaaaattgaatttcttacatgataataattatttg----tagGTCCCTGTTCGACACTTGGTATTTATGGTTCATGGGATTGGTCAAAGATTGGAAAAGTCCAATTTGGTTGATGATGTGGGCAATTTCCGGCATATTACAG
     ||| | |    | | || |||| |||||      || ||||  |   |     ||   |   || | |  ||| |  | ||  | |   ||         ||| | | |   ||                  |||| ||| |     |  | | | | | |||   || ||       |||| || ||||| ||| |||| |||||||| ||||| ||||| ||| || | |||||| | ||||||||||||||||| |||  ||| ||| | | |    
gtttatatatgatttgaacgagcttatcatcatatgcgtttgtatgagtacattaagatatattgtttcaagaaatttgtattagattcataatggtatatgcacgacacgtcggcctaagttggctcaagcagaggttttaagagaggaataaatttgaaacggtaaattttgttgcataccagGTGCCGGTTCGCCACGTGGTGTTTATGGTGCATGGTATTGGACAACGACTCGAAAAGGCAAATTTGGTTGATGATGTTGGCGCTTTTCGGGAAACTGTTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctttataattttcagaaaattgaatttcttacatgataataattatttgtagGTCCCTGTTCGACACTTGGTATTTATGGTTCATGGGATTGGTCAAAGATTGGAAAAGTCCAATTTGGTTGATGATGTGGGCAATTTCCGGCATATTACAG
                            ttcttac  putative branch site (score: 2)
                  aaaattgaatttctta  TA-rich tract