1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgcattttgtttgagaatcggagattttaatcatctatctctcgaagctaactgcaagaaagttgacaatttgacatatgtatcatacttttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGAACCAGTATCCACAGTCAAAGGTGGAGATAAGCCTCTTTCACCACCAAA
species | Glycine max |
transcript | GLYMA09G36770.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAATGTAAAACAGCAG-AGCAGAAAAGATGCAAATACTGTCTTGGCACTG GATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGEST: gi|21285677|gb|BQ473548.1|BQ473548
genomic: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTGgtaagatttc ... ttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTG
EST: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTG GATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGEST: gi|31310538|gb|CD395741.1|CD395741
genomic: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTGgtaagatttc ... ttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTG
EST: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTG GATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGEST: gi|15336929|gb|BI497585.1|BI497585
genomic: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTGgtaagatttc ... ttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTG
EST: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTG GATATCTTGCATGTGCTCGCTGTTCAAGCACAG
genomic: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTGgtaagatttc ... ttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAG
agctaactgcaagaaagttgacaatttgacatatgtatcatacttttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGAACCAGTATCCACAGTCAAAGGTGGAGATAAGCCTCTTTCACCACCAAA
cttttgct CT-rich tract
atatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcattttgtttgagaatcggagattttaatcatctatctctcgaagctaactgcaagaaagttgacaatttgacatatgtatcatacttttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGAACCAGTATCCACAGTCAAAGGTGGAGATAAGCCTCTTTCACCACCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT