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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcttatgtattacatggataaggctttctttgtattagtgtgctaaatcagttttgcaagttttgagggtataattaattactaaattgtcacttgtttcagATTACATATGGGGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTGTTCAATTGGAAAATTACGCTGTATAATATCC

Basic information

species Glycine max
transcript GLYMA09G36070.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G36070.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv13s0158g00120.t01 (Vitis vinifera), 3'ss of exon 6
gtaatcttatgtattacatggataaggctttctttgtattagtgtgctaaatcagttttgcaagttttgagggtataattaattactaaattgtcacttgtttcagATTACATATGGGGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTGTTCAATTGGAAAATTACGCTGTATAATATCC
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gtaacc--atatact-caaagctgaagcttgattctggttgttct--ttgtttcattttggaaatttgaaatagataatctgttaccaaattgccatgt---ccagATAACCTATGGTGATCCAACAGTAAGGATGCCTCATTTGGGTCGACCAGTATACAATTGGAAAGTTGTATTATACGTCATTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9564549|gb|BE474058.1|BE474058
EST:     ACTACTAAAACCTGGAGGGACCTATATTTTG                         ATTACATATGGNGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTG
genomic: ACTACTAAAACCTGGAGGGACCTATATTTTGgtaatcttat ... cttgtttcagATTACATATGGGGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTG
EST: gi|192330142|gb|FK019782.1|FK019782
EST:     ACTACTAAAACCTGGAGGGACCTATATTTTG                         ATTACATATGGGGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTG
genomic: ACTACTAAAACCTGGAGGGACCTATATTTTGgtaatcttat ... cttgtttcagATTACATATGGGGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagttttgcaagttttgagggtataattaattactaaattgtcacttgtttcagATTACATATGGGGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTGTTCAATTGGAAAATTACGCTGTATAATATCC
                                tactaaa  putative branch site (score: 1)
                                             cttgtttc  putative PPT
                      tataattaattactaa  TA-rich tract