1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatctctctctcacatttttaaatgctgctgcttcttcgattgaacttggtataatgtaatttattggtttttacttatgctatttcattccagAGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTCAACAGCCGGTCAACATTTCTGTTGGCAAGGAAGTGGTTGTCAATGGCGA
species | Glycine max |
transcript | GLYMA09G35980.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAACCAAAATATTGTTCCTTCTTTTCACATCAATTCAGAATCCCCAAAGG AGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTCEST: gi|24206180|gb|BU965433.1|BU965433
genomic: CAACCAAAATATTGTTCCTTCTTTTCACATCAATTCAGAATCCCCAAAGGgtatctctct ... ttcattccagAGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTC
EST: TTCTTTTCACATCAATTCAGAATCCCCAAAGG AGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTCEST: gi|193692442|gb|FK627617.1|FK627617
genomic: TTCTTTTCACATCAATTCAGAATCCCCAAAGGgtatctctct ... ttcattccagAGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTC
EST: CCTTCTTTTCACATCAATTCAGAATCCCCAAAGG AGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTCEST: gi|7693469|gb|AW761561.1|AW761561
genomic: CCTTCTTTTCACATCAATTCAGAATCCCCAAAGGgtatctctct ... ttcattccagAGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTC
EST: CAACCAAAATATTGTTCCTTCTTTTCACATCAATTCAGAATCCCCAAAGG AGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTCEST: gi|13788001|gb|BG650593.1|BG650593
genomic: CAACCAAAATATTGTTCCTTCTTTTCACATCAATTCAGAATCCCCAAAGGgtatctctct ... ttcattccagAGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTC
EST: CAACCAAAATATTGTTCCTTCTTTTCACATCAATTCAGAATCCCCAAAGG AGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTCEST: gi|13787910|gb|BG650502.1|BG650502
genomic: CAACCAAAATATTGTTCCTTCTTTTCACATCAATTCAGAATCCCCAAAGGgtatctctct ... ttcattccagAGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTC
EST: CAACCAAAATATTGTTCCTTCTTTTCACATCAATTCAGAATCCCCAAAGG AGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTEST: gi|193619469|gb|FK571337.1|FK571337
genomic: CAACCAAAATATTGTTCCTTCTTTTCACATCAATTCAGAATCCCCAAAGGgtatctctct ... ttcattccagAGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTT
EST: CTTTTCTACATCAATTCAGAATCCCCAAAGG AGAGTGGTTCAACTTCTGCTCCAGCTGGTACTGCATCAGTTTCTGCTGGTCEST: gi|207798278|gb|GD771600.1|GD771600
genomic: CTTTTC-ACATCAATTCAGAATCCCCAAAGGgtatctctct ... ttcattccagAGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTC
EST: CAATTCAGAATCCCCAAAGG AGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTCEST: gi|308098408|gb|HO760149.1|HO760149
genomic: CAATTCAGAATCCCCAAAGGgtatctctct ... ttcattccagAGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTC
EST: CAACCAAAATATTGTTCCTTCTTTTCACATCAATTCAGAATCCCCAAAGG AGAGTGGTTCAACTTCTGCTCCAGCTAGT
genomic: CAACCAAAATATTGTTCCTTCTTTTCACATCAATTCAGAATCCCCAAAGGgtatctctct ... ttcattccagAGAGTGGTTCAACTTCTGCTCCAGCTAGT
attgaacttggtataatgtaatttattggtttttacttatgctatttcattccagAGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTCAACAGCCGGTCAACATTTCTGTTGGCAAGGAAGTGGTTGTCAATGGCGA
tttcattcc CT-rich tract
tataatgtaatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctctctctcacatttttaaatgctgctgcttcttcgattgaacttggtataatgtaatttattggtttttacttatgctatttcattccagAGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTCAACAGCCGGTCAACATTTCTGTTGGCAAGGAAGTGGTTGTCAATGGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA