1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttggtaaacttaatcacgagtaatttcaacaacccttttttagccataggctttgaatagagacatattattccaaattagggggtttctaaactagcgtgtgctgcttctatttttttctggtgcagGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATACGGCCCTTTTGCTCTTCCCCAAAACGGCTTACCCATCACATTATTTCCCAAGAACAAGTAGATA
species | Glycine max |
transcript | GLYMA09G35250.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCCAAGTTGGAGATTTTGGTCCTCCTAC-TCATCTGACCACAAAGTACAG GTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATACGGCCCTTTTGCTCTEST: gi|8669820|gb|BE190927.1|BE190927
genomic: GCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAGgttggtaaac ... tctggtgcagGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATACGGCCCTTTTGCTCT
EST: GCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAG GTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATACGGCCCTTTTGCTCTEST: gi|13125071|gb|BG315614.1|BG315614
genomic: GCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAGgttggtaaac ... tctggtgcagGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATACGGCCCTTTTGCTCT
EST: GCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAG GTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATACGGCCCTTTTGCTCTEST: gi|16348126|gb|BI973721.1|BI973721
genomic: GCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAGgttggtaaac ... tctggtgcagGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATACGGCCCTTTTGCTCT
EST: GCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAG GTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATACGGCCCTTTTGCTCTEST: gi|120494879|gb|EH223046.1|EH223046
genomic: GCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAGgttggtaaac ... tctggtgcagGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATACGGCCCTTTTGCTCT
EST: GCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAG GTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATACGGCCCTTTTGCTCTEST: gi|151407230|gb|EV277045.1|EV277045
genomic: GCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAGgttggtaaac ... tctggtgcagGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATACGGCCCTTTTGCTCT
EST: GCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAG GTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATACGGCCCTTTTGCTCT
genomic: GCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAGgttggtaaac ... tctggtgcagGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATACGGCCCTTTTGCTCT
caaattagggggtttctaaactagcgtgtgctgcttctatttttttctggtgcagGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATACGGCCCTTTTGCTCTTCCCCAAAACGGCTTACCCATCACATTATTTCCCAAGAACAAGTAGATA
ttctaaa putative branch site (score: 2)
ctgcttctattttttt putative PPT
ttctatttttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtaaacttaatcacgagtaatttcaacaacccttttttagccataggctttgaatagagacatattattccaaattagggggtttctaaactagcgtgtgctgcttctatttttttctggtgcagGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATACGGCCCTTTTGCTCTTCCCCAAAACGGCTTACCCATCACATTATTTCCCAAGAACAAGTAGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC