Sequence
atgc intronic sequence ATGC exonic sequencegtatatttgtaattaatatctattaacagaattttttactttttatattgatgctcccccctcctccaaggaagttatacccttggctttaatgacaagtttaaaggaattgcataatttcgtattttatactgcagGTAAAGGAAAAGTCATCCGTTGGGAAGGTAGTCATTGATGAAATTGCAGAATTCATTCAAGAATCTTATCCAAATAATGAATCAGGGATTGTATATTGCT
Basic information
species | Glycine max |
transcript | GLYMA09G34860.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G34860.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv02s0087g00070.t01 (Vitis vinifera), 3'ss of exon 6
gtatatttgtaattaatatctattaacagaattttttactttttatattgatgctcccccctcctccaaggaagttatacccttggctttaatgacaagtttaaaggaattgcataatttcgtattttatactgcagGTAAAGGAAAAGTCATCCGTTGGGAAGGTAGTCATTGATGAAATTGCAGAATTCATTCAAGAATCTTATCCAAATAATGAATCAGGGATTGTATATTGCT
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--------------------------------------gtgtagtttttggtaacttatgttttt-------agtcctaacatttgcttgctggatgatctgagtggta----gtcatgtagttcctcgtattgcagGTACGCGAAAAGTCATCTGTTGGAAGGGTGGTTATTGATGAAATTGCTGAATATATTCAAGAATCATATCCAAATAATGAATCTGGAATTGTTTATTGCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16276851|gb|BI942077.1|BI942077EST: GATGTGTCAAATTCGTCAGCACTGTCAATAGGCCAAACTTGTTTTATATG GTAAAGGAAAAGTCATCCGTTGGGAAGGTAGTCATTGATGAAATTGCAGAA
genomic: GATGTGTCAAATTCGTCAGCACTGTCAATAGGCCAAACTTGTTTTATATGgtatatttgt ... tatactgcagGTAAAGGAAAAGTCATCCGTTGGGAAGGTAGTCATTGATGAAATTGCAGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggctttaatgacaagtttaaaggaattgcataatttcgtattttatactgcagGTAAAGGAAAAGTCATCCGTTGGGAAGGTAGTCATTGATGAAATTGCAGAATTCATTCAAGAATCTTATCCAAATAATGAATCAGGGATTGTATATTGCT
ctttaat putative branch site (score: 4)
ataatttcgtatttta TA-rich tract