Sequence
atgc intronic sequence ATGC exonic sequencegtttgcttgacttgccccattaaatttttagcattgtacttctacatatgcagctactgaaaatttggattttcattcttgcagGAAAAGTAGTGGTTTCTCCAGGGGAGCTTCCATATACAGAGGTGTTACAAG
Basic information
species | Glycine max |
transcript | GLYMA09G33240.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G33240.1 (Glycine max), 3'ss of exon 6
lower sequence: AT5G10510.3 (Arabidopsis thaliana), 3'ss of exon 6
----gtttgcttgacttgccccattaaatttttagcattgtacttctac-atatgcagctactgaaaatttggattttcattct-------tgcagGAAAAGTAGTGGTTTCTCCAGGGGAGCTTCCATATACAGAGGTGTTACAAG-------------------------------------------------
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gtaagtccaaaagcaaaaactctttaaaatcttatcaatggttttatattatgtttctttgatggtaaccagagtttaaaaactgatataacacagGAAGAGTAGCGGTTTCTCTAGAGGAGCTTCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACGTTGGCAAGCAAGGATTGGCCGAGTTGCTGGG
upper sequence: GLYMA09G33240.1 (Glycine max), 3'ss of exon 6
lower sequence: AT5G65510.1 (Arabidopsis thaliana), 3'ss of exon 6
gtttgcttgacttgccccattaaatttttagcattgtacttctacatatgcagctactgaaaatttggat--tttcattcttgcagGAAAAGTAGTGGTTTCTCCAGGGGAGCTTCCATATACAGAGGTGTTACAAG-------------------------------------------------
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gtgagaatcaaattaagatttacatatatgttcttg-atttcaaaattggaatatttccaacttttggttaatgtaaatgtttcagGAAAAGTAGCGGTTTTTCGAGAGGAGCTTCAATATATAGAGGTGTCACAAGGCATCATCAACAAGGTCGCTGGCAAGCAAGAATCGGCCGTGTCGCAGGA
upper sequence: GLYMA09G33240.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s1291g00010.t01 (Vitis vinifera), 3'ss of exon 5
gtttgct-tgacttgccccatta-aatttttagcattg--tacttc-tacatatgcagctactgaaaatttggattttc--attcttgcagGAAAAGTAGTGGTTTCTCCAGGGGAGCTTCCATATACAGAGGTGTTACAAG
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gtataccataacccacctatctgtagtctgttgtatttgttatctcatccataaataaaaattgaacttttatttcttccaaaattttcagGAAAAGTAGTGGCTTTTCAAGGGGAGCTTCCATTTACAGGGGTGTCACAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agcattgtacttctacatatgcagctactgaaaatttggattttcattcttgcagGAAAAGTAGTGGTTTCTCCAGGGGAGCTTCCATATACAGAGGTGTTACAAG
ttttcattctt CT-rich tract
aaaatttggatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgcttgacttgccccattaaatttttagcattgtacttctacatatgcagctactgaaaatttggattttcattcttgcagGAAAAGTAGTGGTTTCTCCAGGGGAGCTTCCATATACAGAGGTGTTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT