Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagtcacagtaaaaaaattgggattcttagaggttaacatttatgatactagtatgattacaactgataaagtttgcctactatagGAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCACTGGCTTCTGTTATAATGGGTATGGCACCGGTGTTAGGGAAG

Basic information

species Glycine max
transcript GLYMA09G31760.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207728963|gb|GD706299.1|GD706299
EST:     GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTG
genomic: GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAGgtacagtcac ... cctactatagGAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTG
EST: gi|207734774|gb|GD709267.1|GD709267
EST:     GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCA
genomic: GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAGgtacagtcac ... cctactatagGAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCA
EST: gi|208293601|gb|GE093505.1|GE093505
EST:     GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
genomic: GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAGgtacagtcac ... cctactatagGAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
EST: gi|207719898|gb|GD704385.1|GD704385
EST:     GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
genomic: GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAGgtacagtcac ... cctactatagGAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
EST: gi|33389673|gb|CA852880.1|CA852880
EST:     GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
genomic: GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAGgtacagtcac ... cctactatagGAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
EST: gi|208072338|gb|GD870270.1|GD870270
EST:     GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
genomic: GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAGgtacagtcac ... cctactatagGAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCACTGGCTTCTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttaacatttatgatactagtatgattacaactgataaagtttgcctactatagGAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCACTGGCTTCTGTTATAATGGGTATGGCACCGGTGTTAGGGAAG
                              aactgat  putative branch site (score: 3)
                                         tttgcct  putative PPT
       atttatgata  TA-rich tract