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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttctgcatgatttaatagcaaaattctagatgtttttattatattatatactgaatggaggatcagatcttagttgatttgttgggcagcctattctctttttacaattttcaatatcttgtatttttgggtgcagCTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAG

Basic information

species Glycine max
transcript GLYMA09G28650.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G28650.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv17s0000g08170.t01 (Vitis vinifera), 3'ss of exon 5
gtatgtttctgcatgatttaatagcaaaattctagatgtttttattatattatatactgaatggaggatcagatcttagttgatttgttgggcagcctattctctttttacaattttcaatatcttgtatttttgggtgcagCTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAA---TTCACCCTACAGTTATTTGCCGAG
                                   |  || |||||    |  ||| | |   |        |  | | |  | || |  |  | ||| |  | | ||    ||| | || ||   | |  ||||     ||||||||||||||||||||| || || || ||||| |||||||   ||||||||||||| || || ||||
----------------------------------taaattgttattgg--tgaatatttagctgtttgcttcacataattcaaattat--gttatcctttaatttgttactgattgttaaaat---gaaaatttgttca-agCTGGTGAGATGCTTCATGTTGCGGAAGCTTTCATAGACAAAAACTTTCACCCTACAGTCATATGTCGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208048655|gb|GD847558.1|GD847558
EST:     CTGTCATCATTCTTG                         CTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTA
genomic: CTGTCATCATTCTTGgtatgtttct ... ttgggtgcagCTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTA
EST: gi|209725416|gb|BW658278.1|BW658278
EST:     CACCCAAGATGAAGAAGTCGGAGATGGAACGACATCTGTCATCATTCTTG                         CTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTA
genomic: CACCCAAGATGAAGAAGTCGGAGATGGAACGACATCTGTCATCATTCTTGgtatgtttct ... ttgggtgcagCTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTA
EST: gi|208122378|gb|GD920843.1|GD920843
EST:     CACCCAAGATGAAGAAGTCGGAGATGGAACGACATCTGTCATCATTCTTG                         CTGGTGAGATGCTTCATGTCGCCG
genomic: CACCCAAGATGAAGAAGTCGGAGATGGAACGACATCTGTCATCATTCTTGgtatgtttct ... ttgggtgcagCTGGTGAGATGCTTCATGTCGCCG
EST: gi|209711120|gb|BW676339.1|BW676339
EST:     CACCCAAGATGAAGAAGTCGGAGATGGAACGACATCTGTCATCATTCTTG                         CTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTA
genomic: CACCCAAGATGAAGAAGTCGGAGATGGAACGACATCTGTCATCATTCTTGgtatgtttct ... ttgggtgcagCTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTA
EST: gi|208324562|gb|GE118849.1|GE118849
EST:     CACCCAAGATGAAGAAGTCGGAGATGGAACGACATCTGTCATCATTCTTG                         CTGGTGAGATGCTTCATGTCG
genomic: CACCCAAGATGAAGAAGTCGGAGATGGAACGACATCTGTCATCATTCTTGgtatgtttct ... ttgggtgcagCTGGTGAGATGCTTCATGTCG
EST: gi|209700495|gb|BW660895.1|BW660895
EST:     CACCCAAGATGAAGAAGTCGGAGATGGAACGACATCTGTCATCATTCTTG                         CTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTA
genomic: CACCCAAGATGAAGAAGTCGGAGATGGAACGACATCTGTCATCATTCTTGgtatgtttct ... ttgggtgcagCTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTA
EST: gi|193333955|gb|FK301343.1|FK301343
EST:     CACCCAAGATGAAGAAGTCGGAGATGGAACGACATCTGTCATCATTCTTG                         CTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTA
genomic: CACCCAAGATGAAGAAGTCGGAGATGGAACGACATCTGTCATCATTCTTGgtatgtttct ... ttgggtgcagCTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTA
EST: gi|193426285|gb|FK389060.1|FK389060
EST:     CACCCAAGATGAAGAAGTCGGAGATGGAACGACATCTGTCATCATTCTTG                         CTGGTGAGATGCTTCATGTCGCCGATGCGTTCATTGACAAAATTCACCCT
genomic: CACCCAAGATGAAGAAGTCGGAGATGGAACGACATCTGTCATCATTCTTGgtatgtttct ... ttgggtgcagCTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCT
EST: gi|193408879|gb|FK371133.1|FK371133
EST:     CACCCAAGATGAAGAAGTCGGAGATGGAACGACATCTGTCATCATTCTTG                         CTGGTGAGATGCTTCATGTCGCCGATGCGTTCTATTTGACAAAATTCACCC
genomic: CACCCAAGATGAAGAAGTCGGAGATGGAACGACATCTGTCATCATTCTTGgtatgtttct ... ttgggtgcagCTGGTGAGATGCTTCATGTCGCCGATGCATTC-ATT-GACAAAATTCACCC
EST: gi|213618229|gb|DB972999.1|DB972999
EST:     CACCCAAGATGAAGAAGTCGGAGATGGAACGACATCTGTCATCATTCTTG                         CTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTA
genomic: CACCCAAGATGAAGAAGTCGGAGATGGAACGACATCTGTCATCATTCTTGgtatgtttct ... ttgggtgcagCTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgggcagcctattctctttttacaattttcaatatcttgtatttttgggtgcagCTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAG
                                        tattttt  CT-rich tract
                 tttttacaattttcaa  TA-rich tract