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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaggcaagaattgcttcaactttgatgtgatattccatttggtcttttcttttgaatatgtcatgatgctcttattttttcagatcctccttgcaagagGTGCAAGTCGAATGGCTTTGAATTGCAATGG

Basic information

species Glycine max
transcript GLYMA09G26560.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G26560.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv16s0100g00690.t01 (Vitis vinifera), 3'ss of exon 7
gtcaggcaagaattgcttcaactttgatgtgatattccatttggtcttttcttttga--atatgtcatgatgc--tcttattttttcagatcctccttgcaagagGTGCAAGTCGAATGGCTTTGAATTGCAATGG
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-----gcaagaactattataacttaaac-tgtttctctccctagttgtgttttatcacaatttgagatgatgtgttcttatttctgcagATCCTCCTTGCAAGAGGTGCCAGTCGGTTGACTTTAAACTGCAACGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcttttgaatatgtcatgatgctcttattttttcagatcctccttgcaagagGTGCAAGTCGAATGGCTTTGAATTGCAATGG
                                        tcctccttgc  CT-rich tract
                           ttattttttcagat  TA-rich tract