1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tacccttcattttgacattgaatttcccttaagcacattattaccatagaactagaagactgacacataaacatttgtttctaattgtatcatactgcagTGGGGGGCAATGGAATTCTGGTGGACAATGTGACAGTGAAACTGTGCCTATCAAGAATGAGAAGTACTTGAGAGAATACCCCCCTAAGATGAGGGTATTG
species | Glycine max |
transcript | GLYMA09G16780.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTTCTTCAGAGGCTATTCTGCTTCACATTTCAG TGGGGGGCAATGGAATTCTGGTGGACAATGTGACAGTGAAACTGTGCCTATEST: gi|151406520|gb|EV276335.1|EV276335
genomic: CTTCTTCAGAGGCTATTCTGCTTCACATTTCAGgtgcagtaaa ... catactgcagTGGGGGGCAATGGAATTCTGGTGGACAATGTGACAGTGAAACTGTGCCTAT
EST: CCATCTAAGTCTATGGTCTTCTTCAGAGGCTATTCTGCTTCACATTTCAG TGGGGGGCAATGGAATTCTGGTGGACAATGTGACAGTGAAACTGTGCCTAT
genomic: CCATCTAAGTCTATGGTCTTCTTCAGAGGCTATTCTGCTTCACATTTCAGgtgcagtaaa ... catactgcagTGGGGGGCAATGGAATTCTGGTGGACAATGTGACAGTGAAACTGTGCCTAT
atagaactagaagactgacacataaacatttgtttctaattgtatcatactgcagTGGGGGGCAATGGAATTCTGGTGGACAATGTGACAGTGAAACTGTGCCTATCAAGAATGAGAAGTACTTGAGAGAATACCCCCCTAAGATGAGGGTATTG
ttctaat putative branch site (score: 2)
ataaacatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacccttcattttgacattgaatttcccttaagcacattattaccatagaactagaagactgacacataaacatttgtttctaattgtatcatactgcagTGGGGGGCAATGGAATTCTGGTGGACAATGTGACAGTGAAACTGTGCCTATCAAGAATGAGAAGTACTTGAGAGAATACCCCCCTAAGATGAGGGTATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- cccttca
- - - - - - - - - - - - -cccttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacac