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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttctttgagatgctacatattccttgtgccatcagcatctttaagcagcataacttttcattactgacttcataactatgttccccttgcatttgttctctatctaaatgatattaagttaataaaactttcataacagGTAACTGGTTACAGTTCAACAGCCCTGTTGAGCAGAATTCAATGCAAACTATCAATCATTCTCCTGGTTCTAGGATCATAAGCCCAACAACAGGCAATCA

Basic information

species Glycine max
transcript GLYMA09G11630.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209722250|gb|BW675070.1|BW675070
EST:     TCGGAGTTTCCGATACCAAGTGAGTTCACCTGTAGCTAACTCTCCCCCAG                         GTAACTGGTTACAGTTCAACAGCCCTGTTGAGCAGAATTCAATGCAAACTA
genomic: TCGGAGTTTCCGATACCAAGTGAGTTCACCTGTAGCTAACTCTCCCCCAGgttggttctt ... ttcataacagGTAACTGGTTACAGTTCAACAGCCCTGTTGAGCAGAATTCAATGCAAACTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgcatttgttctctatctaaatgatattaagttaataaaactttcataacagGTAACTGGTTACAGTTCAACAGCCCTGTTGAGCAGAATTCAATGCAAACTATCAATCATTCTCCTGGTTCTAGGATCATAAGCCCAACAACAGGCAATCA
                                           ctttcat  CT-rich tract
                tatctaaatgatatta  TA-rich tract