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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttcttgtataactgtctgcaaaaccctgcgtattttattgtcatcaatattaatttctcaacattgtgtcagttatttgcaacttggttagtggcagccaacaattggtaatattcttacaattttcataattgattaggctgattttctaattttggtatgctttttgtagTTTGCTGGTGGTCTGGATGCAGAAACTTTGTGTGCTTTTGAAGAGATAAGGCAACATGTACCAGGACACTTGGCAGGTTCTCGAGAACTTTTGGCTGGCA

Basic information

species Glycine max
transcript GLYMA09G09350.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5126618|gb|AI748354.1|AI748354
EST:     AAGAATCCCTTCTGCTTCAGGGCATGCATTTTGCATATAGAGCTCATCAG                         TTTGCTGGTGGTCTGGATGCAGAAACTTTGTGTGCTTTTGAAGAGATAAGG
genomic: AAGAATCCCTTCTGCTTCAGGGCATGCATTTTGCATATAGAGCTCATCAGgtatttcttg ... ctttttgtagTTTGCTGGTGGTCTGGATGCAGAAACTTTGTGTGCTTTTGAAGAGATAAGG
EST: gi|6094724|gb|AW119388.1|AW119388
EST:     AAGAATCCCTTCTGCTTCAGGGCATGCATTTTGCATATAGAGCTCATCAG                         TTTGCTGGTGGTCTGGATGCAGAAACTTTGTGTGCTTTTGAAGAGATAAGG
genomic: AAGAATCCCTTCTGCTTCAGGGCATGCATTTTGCATATAGAGCTCATCAGgtatttcttg ... ctttttgtagTTTGCTGGTGGTCTGGATGCAGAAACTTTGTGTGCTTTTGAAGAGATAAGG
EST: gi|192328412|gb|FK020123.1|FK020123
EST:     AAGAATCCCTTCTGCTTCAGGGCATGCATTTTGCATATAGAGCTCATCAG                         TTTGCTGGTGGTCTGGATGCAGAAACTTTGTGTGCTTTTGAAGAGATAAGG
genomic: AAGAATCCCTTCTGCTTCAGGGCATGCATTTTGCATATAGAGCTCATCAGgtatttcttg ... ctttttgtagTTTGCTGGTGGTCTGGATGCAGAAACTTTGTGTGCTTTTGAAGAGATAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaattttcataattgattaggctgattttctaattttggtatgctttttgtagTTTGCTGGTGGTCTGGATGCAGAAACTTTGTGTGCTTTTGAAGAGATAAGGCAACATGTACCAGGACACTTGGCAGGTTCTCGAGAACTTTTGGCTGGCA
                             ttctaat  putative branch site (score: 2)
                                           tgcttttt  putative PPT
     ttttcataattgatta  TA-rich tract