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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagttcaacataaacaatcagttatacagttttataattttttaaaagcgttagtattttatctcaagatgtctaattatttaaatttgaaaatgaacagGCTGTGCATGATGGAGTGGATATACTCAGCCTTTCAGTTGGACCAAATAGTCCTCCGTCAAACACCAAAACTACATTTTTGAACCCTTTTGATGCTACAC

Basic information

species Glycine max
transcript GLYMA09G06640.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G06640.1 (Glycine max), 3'ss of exon 6
lower sequence: AT2G19170.1 (Arabidopsis thaliana), 3'ss of exon 6
----tagttcaacataaa---caatcagttatacagttttataattttttaaaagcgttagtattttatctcaagatgtctaattatttaaatttgaaaatgaacagGCTGTGCATGATGGAGTGGATATACTCAGCCTTTCAGTTGGACCAAATAGTCCTCCGTCAAACACCAAAACTACATTTTTGAACCCTTTTGATGCTACAC
    |  |  |   || |   |||  ||| |   | | |||||| |  |      | |    ||| | | |   ||| |  ||      | ||||  |     ||||||||| ||||||||||| ||||| || ||||| |||||||| ||||||||||||||  |||  ||||| || || || ||||| || ||||||||||| |
ccggttatctattttagatttcaacgagtcaagtaatcttataactgctactttccatggagattatctatgttgatattaaaa----gagattttcatg---acagGCTGTTCATGATGGAGTTGATATCCTGAGCCTCTCAGTTGGTCCAAATAGTCCTCCCACAACTACCAAGACAACGTTCTTGAATCCATTTGATGCTACCC

upper sequence: GLYMA09G06640.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv11s0103g00550.t01 (Vitis vinifera), 3'ss of exon 6
tagttcaacataaac-aatcagttatacagttttataattttttaaaagcgttagtattttatctcaagatgtctaattatttaaa--tttgaaaatgaacagGCTGTGCATGATGGAGTGGATATACTCAGCCTTTCAGTTGGACCAAATAGTCCTCCGTCAAACACCAAAACTACATTTTTGAACCCTTTTGATGCTACAC
   ||   ||| ||  || ||  | |  || |     || | ||       |   | |||| | |      || || | ||| ||   ||      |||||||||||| |||||||| ||||| || ||||  || || || || ||||||||||||||  ||| |||||| || || ||||| ||||||||||||||| |||
-ttttgcccatgaattaagcatctttttaggt--gatatctgttggggtattctttgttttttgttttttcgtttattaattgaagacttcttctgtgaacagGCTGTTCATGATGGTGTGGACATTCTCAATCTCTCTGTGGGGCCAAATAGTCCTCCAGCAACCACCAAGACCACGTTTTTAAACCCTTTTGATGCTGCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22523793|gb|BU082604.1|BU082604
EST:     ATAGACTCTTTGGAGGATTTATTGCTGATGTAGCTGCTGCAATTGATCAG                         GCTGTGCATGATGGAGTGGATATAATCAGCCTTTCAGTTGGACCAAATAGT
genomic: ATAGACTCTTTGGAGGATTTATTGCTGATGTAGTTGCTGCAATTGATCAGgtatgcaact ... aaatgaacagGCTGTGCATGATGGAGTGGATATACTCAGCCTTTCAGTTGGACCAAATAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcgttagtattttatctcaagatgtctaattatttaaatttgaaaatgaacagGCTGTGCATGATGGAGTGGATATACTCAGCCTTTCAGTTGGACCAAATAGTCCTCCGTCAAACACCAAAACTACATTTTTGAACCCTTTTGATGCTACAC
                         gtctaat  putative branch site (score: 3)
         tattttatctcaagat  TA-rich tract