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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggagaattttttttgtcaaatttgttagtctcccattgtgcataaaacttacgatgcattaacaaattgtgttaatctcatttagCACAGTGCTGCACCCCTTAAAATAAAGCGTCTTGCACATGATCCTCAAAGGTTCGCTTGGGCAGTAGGTATTGCACAGTCACGATGTATTAACATGCAAA

Basic information

species Glycine max
transcript GLYMA09G05510.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G05510.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv01s0011g01080.t01 (Vitis vinifera), 3'ss of exon 6
gtaaggagaattttttttgtcaaatttgttagtctcccattgtg-cataaaacttacgatgcattaacaaat-----tgtgttaatct-catttagCACAGTGCTGCACCCCTTAAAATAAAGCGTCTTGCACATGATCCTCAAAGGTTCGCTTGGGCAGTAGGTATTGCACAGTCACGATGTATTAACATGCAAA
|||  ||| | ||||| | |    ||   || | | |  || ||    |    |  |      |||||| ||     | |||||| |  |||  |||||  || ||  ||||||||||||||||| ||||| | ||||||  | || |||  |||||||||  |||| ||||| |||||||| || ||||||||||
gtattgagcaatttttgtatgcttttccatactttacttttatgatccattgttctctcctttttaacacatgcttatatgttaaaccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGATTCATTTGGGCAGTGAGTATAGCACAATCACGATGCATAAACATGCAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcccattgtgcataaaacttacgatgcattaacaaattgtgttaatctcatttagCACAGTGCTGCACCCCTTAAAATAAAGCGTCTTGCACATGATCCTCAAAGGTTCGCTTGGGCAGTAGGTATTGCACAGTCACGATGTATTAACATGCAAA
                                             tctcattt  CT-rich tract
                           attaacaaatt  TA-rich tract