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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttttaataaatacatgttatgtgttggcaaagtgtaaatcaaatgatttttgaaattgtacaaactgtttgcaatctttttcctgcttattctaacagTATCGAAGACTGCCTCCCTGGAATTTGCAAGAAGGAAGGATCCAGTTGTATGCATTTTACTGCATCCTGGTACAGTTGACACAGATCTCTCTAAGCCATT

Basic information

species Glycine max
transcript GLYMA09G03440.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31467255|gb|CD409283.1|CD409283
EST:     ATCGATCTTCAAAGGCTTCTCTTAATCAAT                         TATCGAAGACTGCCTCCCTGGAATTTGCAAGAAGGAAGGATCCAGTTGTAT
genomic: ATCGATCTTCAAAGGCTTCTCTTAATCAATgtaagacttt ... attctaacagTATCGAAGACTGCCTCCCTGGAATTTGCAAGAAGGAAGGATCCAGTTGTAT
EST: gi|14990094|gb|BI315767.1|BI315767
EST:     TCTTGGGGGTTGGCACTCTTATCGATCTTCAAAGGCTTCTCTTAATCAAT                         TATCGAAGACTGCCTCCCTGGGATTTGCAAGAAGGAAGGATCCAGTTGTAT
genomic: TCTTGGGGGTTGGCACTCTTATCGATCTTCAAAGGCTTCTCTTAATCAATgtaagacttt ... attctaacagTATCGAAGACTGCCTCCCTGGAATTTGCAAGAAGGAAGGATCCAGTTGTAT
EST: gi|31467256|gb|CD409284.1|CD409284
EST:     ATCGATCTTCAAAGGCTTCTCTTAATCAAT                         CATCGAAGACTGCCTCCCTGGAATTTGCAAGAAGGAAGGATCCAGTGGTAT
genomic: ATCGATCTTCAAAGGCTTCTCTTAATCAATgtaagacttt ... attctaacagTATCGAAGACTGCCTCCCTGGAATTTGCAAGAAGGAAGGATCCAGTTGTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatttttgaaattgtacaaactgtttgcaatctttttcctgcttattctaacagTATCGAAGACTGCCTCCCTGGAATTTGCAAGAAGGAAGGATCCAGTTGTATGCATTTTACTGCATCCTGGTACAGTTGACACAGATCTCTCTAAGCCATT
                               tctttttcctgcttat  CT-rich tract
     tttgaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agttttaataaatacatgttatgtgttggcaaagtgtaaatcaaatgatttttgaaattgtacaaactgtttgcaatctttttcctgcttattctaacagTATCGAAGACTGCCTCCCTGGAATTTGCAAGAAGGAAGGATCCAGTTGTATGCATTTTACTGCATCCTGGTACAGTTGACACAGATCTCTCTAAGCCATT

- - - - - - tacatgt
- - - - - - - - - - - gtgttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgc