1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgctgcattatccaaatttactagtttggcagcattggcaatgcagttatcctcatgagtgattttcttggaatgtgactgatattggtggtaacaacagGAAGGTATGGTGGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAAAGGCACAAATTTAGCTATCAGAGATATAAAGTCAAGTGATCCATATGTTGTTT
species | Glycine max |
transcript | GLYMA09G02830.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAGTAGTTTTATGGACAGTTTTAAAAGTACTAGTAGTTCACAGAGAATG GAAGGTATGGTGGAATTTATTGGAATGTEST: gi|120495184|gb|EH223351.1|EH223351
genomic: AAAGTAGTTTTATGGACAGTTTTAAAAGTACTAGTAGTTCACAGAGAATGgtaattttat ... gtaacaacagGAAGGTATGGTGGAATTTATTGGAATGT
EST: TCACAGAGAATG GAAGGTATGGTGGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAAAGGCEST: gi|120495547|gb|EH223714.1|EH223714
genomic: TCACAGAGAATGgtaattttat ... gtaacaacagGAAGGTATGGTGGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAAAGGC
EST: AAAGTAGTTTTATGGACAGTTTTAAAAGTACTAGTAGTTCACAGAGAATG GAAGGTATGGTGGAATT-ATTGGAATGTTGAAGGTG
genomic: AAAGTAGTTTTATGGACAGTTTTAAAAGTACTAGTAGTTCACAGAGAATGgtaattttat ... gtaacaacagGAAGGTATGGTGGAATTTATTGGAATGTTGAAGGTG
gttatcctcatgagtgattttcttggaatgtgactgatattggtggtaacaacagGAAGGTATGGTGGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAAAGGCACAAATTTAGCTATCAGAGATATAAAGTCAAGTGATCCATATGTTGTTT
tggtaac putative branch site (score: 2)
attttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctgcattatccaaatttactagtttggcagcattggcaatgcagttatcctcatgagtgattttcttggaatgtgactgatattggtggtaacaacagGAAGGTATGGTGGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAAAGGCACAAATTTAGCTATCAGAGATATAAAGTCAAGTGATCCATATGTTGTTT
- -tgcatta
- - - - - -ccaaatt
- - - - - - - - - - - - - - - - - - - caatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attggtg