1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tttgatgcaattttatatattccactttagtatcttgttcactatttctttctttcttggaaatcagtactaatgactagcaaatggacatcatctgcagGCATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTACCTTCCA
species | Glycine max |
transcript | GLYMA09G01820.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCACCACATTGGAAGGAGAAAAAGACCTTTCTAAATACACATTAACACT GCATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTAC-TTCCEST: gi|193566982|gb|FK525083.1|FK525083
genomic: ATCACCACATTGGAAGGAGAAAAAGACCTTTCTAAATACACATTAACACTgtgagtactg ... tcatctgcagGCATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTACCTTCC
EST: AAAAAGAACCTTTCTAAATACACATTAACACT GCATCGACGTATAGTTCAGTACAAGACTGCATATTATTCATTTTACCTTCCEST: gi|192325137|gb|FK017523.1|FK017523
genomic: AAAAAG-ACCTTTCTAAATACACATTAACACTgtgagtactg ... tcatctgcagGCATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTACCTTCC
EST: ATCACCACATTGGAAGGAGAAAAAGACCTTTCTAAATACACATTAACACT GCATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTACCTTCCEST: gi|6567264|gb|AW234875.1|AW234875
genomic: ATCACCACATTGGAAGGAGAAAAAGACCTTTCTAAATACACATTAACACTgtgagtactg ... tcatctgcagGCATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTACCTTCC
EST: ATCACCACATTGGAAGGAGAAAAAGACCTTTCTAAATACACATTAACACT GCATCCACGTATAGTTCAATACAAGACTGCEST: gi|7028813|gb|AW458596.1|AW458596
genomic: ATCACCACATTGGAAGGAGAAAAAGACCTTTCTAAATACACATTAACACTgtgagtactg ... tcatctgcagGCATCGACGTATAGTTCAGTACAAGACTGC
EST: ATCACCACATTGGAAGGAGAAAAAGACCTTTCTAAATACACATTAACACT GCATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTACCTTCCEST: gi|7284732|gb|AW597282.1|AW597282
genomic: ATCACCACATTGGAAGGAGAAAAAGACCTTTCTAAATACACATTAACACTgtgagtactg ... tcatctgcagGCATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTACCTTCC
EST: ATCACCACATTGGAAGGAGAAAAAGACCTTTCTAAATACACATTAACACT GCATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTACCTTCC
genomic: ATCACCACATTGGAAGGAGAAAAAGACCTTTCTAAATACACATTAACACTgtgagtactg ... tcatctgcagGCATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTACCTTCC
ttctttctttcttggaaatcagtactaatgactagcaaatggacatcatctgcagGCATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTACCTTCCA
tactaat putative branch site (score: 1)
tactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgatgcaattttatatattccactttagtatcttgttcactatttctttctttcttggaaatcagtactaatgactagcaaatggacatcatctgcagGCATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTACCTTCCA
- tgatgca
- - - - - - - - - -ttccact
- - - - - - - - - - - - - - - - -cttgttc