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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtattgtgtgaaagaacttgtgatcacagtttccttattttgtgccatgcactcttttgcaaagagtcaatgccatatggcgttgtgttgtttcagGAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAATTATGAATGG

Basic information

species Glycine max
transcript GLYMA09G01370.4
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315382|gb|GR825191.1|GR825191
EST:     TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAG                         GAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAAT
genomic: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAGgtgggtattg ... gttgtttcagGAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAAT
EST: gi|207836097|gb|GD808754.1|GD808754
EST:     TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAG                         GAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAAT
genomic: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAGgtgggtattg ... gttgtttcagGAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAAT
EST: gi|208082045|gb|GD883411.1|GD883411
EST:     TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAG                         GAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAAT
genomic: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAGgtgggtattg ... gttgtttcagGAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAAT
EST: gi|193447808|gb|FK414073.1|FK414073
EST:     TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAG                         GAGCTCTTGACAAGACATAAATCTA
genomic: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAGgtgggtattg ... gttgtttcagGAGCTCTTGACAAGACATAAATCTA
EST: gi|254314656|gb|GR829649.1|GR829649
EST:     TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAG                         GAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAAT
genomic: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAGgtgggtattg ... gttgtttcagGAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAAT
EST: gi|15203298|gb|BI426066.1|BI426066
EST:     TCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAG                         GAGCTCTTGACAAGACATAAATCTACTGTAGCTGAATTCCTATCCAAGAAT
genomic: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAGgtgggtattg ... gttgtttcagGAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAAT
EST: gi|21887763|gb|BQ740976.1|BQ740976
EST:     TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAG                         GAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAAT
genomic: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAGgtgggtattg ... gttgtttcagGAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAAT
EST: gi|11414041|gb|BF425981.1|BF425981
EST:     TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTCTAAG                         GAGCTCTTGACAAGACATAAATCTACTGCGGCTGAATTCCTTTCCAAGAAT
genomic: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAGgtgggtattg ... gttgtttcagGAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgccatgcactcttttgcaaagagtcaatgccatatggcgttgtgttgtttcagGAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAATTATGAATGG
                                              ttgtttc  CT-rich tract