Sequence
atgc intronic sequence ATGC exonic sequencegtaagtagcatttgcacccaatgtataaattttgttaactgtgtttctgagagcatggtacttgttctacttagcatatcttattcgcataaatatgatgatattaacttcaagatattcttggtttcttccctttcagACCAACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATC
Basic information
| species | Glycine max |
| transcript | GLYMA09G01160.1 |
| intron # | 6 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G01160.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os04g57350.1 (Oryza sativa), 3'ss of exon 8
gtaagtagcatttgcacccaatgtataaattttgttaactgtgtttctga--gagcatggtacttgttctacttagcatatcttattcgcataaatatgatgatattaacttcaagatattcttggtttcttccctttcagACCAACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATC
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--------------------------------tgaagaaaaagtttggaactaaacaaggcctctattcctctcagt-----tggcatgcatgact-tcctaatggagctttctacgt---catgtttttccattttgtagACTAGCAGTGATTTCGATGCGAAGCCAATGGTCATGTTGCTGGGTCAGTATTCCACAGGAAAAACCACATTCATAAAGCATTTACTGAAGACAAATTATC
upper sequence: GLYMA09G01160.1 (Glycine max), 3'ss of exon 6
lower sequence: AT4G05520.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagtagcatttgcacccaatgtataaattttgttaactgtgtttctgagagcatggtacttgttctacttagcatatcttattcgcataaatatgatgatattaacttcaagatattcttggtttcttccctttcagACCAACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATC
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gtgagtaatatccttactgtttcagaaacacttgtgagtttttgtttattccgttttttcggtgaagagctaaagaactcatatctatatcaccatgg-aaaatgattctcagtttattgata-ctttatgatttgcagACTAGTAGCGATTTTGATGCCAAACCAATGGTAATGCTTTTGGGTCAATATTCCACCGGAAAAACAACATTTATAAAACACTTGCTCGGATGTGACTACC
upper sequence: GLYMA09G01160.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 9
-----------------------------------------------------------gtaagtagcatttgcacccaatgta-taaattttgttaactgtgtttctgagagcatggtacttgttc-tacttagcatatcttattcgcataaatatgatgatattaacttcaagatattcttggtttcttccctttcagACCAACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATC
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gtaagtggactgagtattttagtttgtttatgatgagatgcctaaatttgttaatgatgagatgtctctcccttttcctatgtaacacatgttctaaaaaatgtgatattatgtatgctctgttctcgtagatttctgactctagctccagaagttctatt-tgagagtatggaaatattttttattttttcttttgcagACACATAGTGACTTTGATGCCAAACCCATGGTTATGCTTTTGGGTCAGTATTCAACTGGGAAAACTACATTCATAAAACATTTACTCGGATGTAATTTCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209701792|gb|BW667417.1|BW667417EST: AGCCCTTGGAAGTTGCTTATCAATACAATGATTTTGTGTCTCCATTGTTG ACCAACACTGATTTTGATGCTAAACCAA
genomic: AGCCCTTGGAAGTTGCTTATCAATACAATGATTTTGTGTCTCCATTGTTGgtaagtagca ... tccctttcagACCAACACTGATTTTGATGCTAAACCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcgcataaatatgatgatattaacttcaagatattcttggtttcttccctttcagACCAACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATC
tattaac putative branch site (score: 1)
tattcttggtttcttc putative PPT
taaatatgatgatatt TA-rich tract
