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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttagaagacaaattagcagaaatacctatttgtttctgctatggcatgatattgatagcacttccataaatggttcggggttttatttcatcggtactgactttagtatattgtcatctagGATACTGTGCTGATGACTGCTCAGCAATTGCGGACTCTGGAACTTCTTTATTGGCTGGTCCAACG

Basic information

species Glycine max
transcript GLYMA09G00810.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00810.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 7
--------------------------------gtatgtttagaag--acaaattagcagaaatacctatttgtttctgctatggcatgatattgatagcacttccataaatggttcggggttttatttcatcggtactgactttagtatattgtcatctagGATACTGTGCTGATGACTGCTCAGCAATTGCGGACTCTGGAACTTCTTTATTGGCTGGTCCAACG
                                 ||     | |||    ||||| |  |||| |   |   |  |    |  |  |   | ||   |     |    | ||  || |     |||||   || ||  ||||   || |||    |    ||| |||||||| |  |  ||  |||||||||| || |||||||||||||| ||||| |||||||||
gtgagacccctcttgaaaccattgtgtgctttataaaccaaaaagtaggaaattggaggaaagaaggaaaagcctagatttagagacctttttttaatggtataagcacataattagtatgattattatgtcagt-ttgacacaagcataccacc--tcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298187278|gb|HO034427.1|HO034427
EST:     TTTGACATGGGAGATGTGCTTATTGCTGGTAAACCCACTG                         GATACTGTGCTGATGACTGCTCAGCAATTGCGGACTCTGGAACTTCTTTAT
genomic: TTTGACATGGGAGATGTGCTTATTGCTGGTAAACCCACTGgtatgtttag ... tgtcatctagGATACTGTGCTGATGACTGCTCAGCAATTGCGGACTCTGGAACTTCTTTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatggttcggggttttatttcatcggtactgactttagtatattgtcatctagGATACTGTGCTGATGACTGCTCAGCAATTGCGGACTCTGGAACTTCTTTATTGGCTGGTCCAACG
                            tactgac  putative branch site (score: 1)
              ttttatttcat  TA-rich tract