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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaacataaatgaattttcattttttttttatattattggggtttatggaaataagtctggcatgtctattgagcatattacttttcatattcttgggcagCTATGGACATATCTTCTGATCTCACTGAGCTAGGCAGAACACCAGTAACAGTTGTATGTGCTGGTGTAAAATCAATATTAGATATTCCCAGGACGCTTGA

Basic information

species Glycine max
transcript GLYMA09G00500.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00500.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0009g02380.t01 (Vitis vinifera), 3'ss of exon 6
aaacataaatgaattttcattttttttttat-attattggggtttatggaaataagt-ctggcatgtctattgagcatattacttttcatattcttgggcagCTATGGACATATCTTCTGATCTCACTGAGCTAGGCAGAACACCAGTAACAGTTGTATGTGCTGGTGTAAAATCAATATTAGATATTCCCAGGACGCTTGA
 ||| | ||   ||||  |  | | |    | ||||||||  || |       | |   |   |||||   |  || |  |  ||   || |||||  ||||| |||||||||||||||||||| |||||||| || ||||| |||||  ||||| | |  ||||| |||||||||||||| ||||||||||| || || ||
gaac-tgaaaacatttgaagctctctgaagtgattattggaattaacaagcccatgcattaatatgtcaggtatgcttgat-tttgatattttcttttgcagCAATGGACATATCTTCTGATCTTACTGAGCTTGGAAGAACTCCAGTGGCAGTTATCTCGGCTGGGGTAAAATCAATATTGGATATTCCCAGAACCCTGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18734973|gb|BM528493.1|BM528493
EST:     CGTTTTTGTTACTGGGGGGATTGGGGGAGTGCACAGACATTCGGAACAGA                         CTATGGACATATCTTCTGATCTCACTGAGCTAGGCAGAACACCAGTAACAG
genomic: CGTTTTTGTTACTGGGGGGATTGGGGGAGTGCACAGACATTCGGAACAGAgtatgttaac ... tcttgggcagCTATGGACATATCTTCTGATCTCACTGAGCTAGGCAGAACACCAGTAACAG
EST: gi|298172196|gb|HO021788.1|HO021788
EST:     CGTTTTTGTTACTGGGGGGATTGGGGGAGTGCACAGACATTCGGAACAGA                         CTATGGACATATCTTCTGATCTCACTGAGC
genomic: CGTTTTTGTTACTGGGGGGATTGGGGGAGTGCACAGACATTCGGAACAGAgtatgttaac ... tcttgggcagCTATGGACATATCTTCTGATCTCACTGAGC
EST: gi|298176891|gb|HO026898.1|HO026898
EST:     CGTTTTTGTTACTGGGGGGATTGGGGGAGTGCACAGACATTCGGAACAGA                         CTATGGACATATCTTCTGATCTCACTGAGC
genomic: CGTTTTTGTTACTGGGGGGATTGGGGGAGTGCACAGACATTCGGAACAGAgtatgttaac ... tcttgggcagCTATGGACATATCTTCTGATCTCACTGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaaataagtctggcatgtctattgagcatattacttttcatattcttgggcagCTATGGACATATCTTCTGATCTCACTGAGCTAGGCAGAACACCAGTAACAGTTGTATGTGCTGGTGTAAAATCAATATTAGATATTCCCAGGACGCTTGA
                                   cttttcatattctt  CT-rich tract
                             atattacttttcatat  TA-rich tract