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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatttttttagtttagccttttagcattacaaaatgtataacatgcaaattttagagttgaagttcttgatgatgtgtcctcctttccttcagGAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTGTCAGATATGTGGAAAGATTTTGATTCACGTGTATTGCGATACAAG

Basic information

species Glycine max
transcript GLYMA09G00470.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00470.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G061681_T02 (Zea mays), 3'ss of exon 6
gtaagatttttttagtttagccttttagcattacaaaatgtataacatg-ca-aattttagagttgaagt--tcttgatgat-gtgtcctcctttccttcagGAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTGTCAGATATGTGGAAAGATTTTGATTCACGTGTATTGCGATACAAG
  || |       |      | |    || | || | | | || | ||| || |||||   |  | || |  || ||||  |   |    | || | ||||||| |||||||| ||||||||| ||||||| || || ||||| |||||||||||||| ||||||||||| || ||  | ||||| || 
-caacacagcaggaaagagtcttgcctgcttgactaga-gaatgaaatggcacaatttggtacctaaaatggtcctgatttttaagataacattcctttcagGAGAGAGATAATATGCAGAAGACAGAGTTTTTGAAGGCATTATCAGATATGTGGAAGGATTTTGATTCCCGAGTTCTTCGATATAAA

upper sequence: GLYMA09G00470.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G71410.1 (Arabidopsis thaliana), 3'ss of exon 6
-----------------gtaagatttttttagtttagcc--ttttagcattacaaaatg-tataacatgcaaattttagagttgaagttcttgatgatgtg-tcctcctttccttcagGAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTGTCAGATATGTGGAAAGATTTTGATTCACGTGTATTGCGATACAAG
                   |  ||| ||| ||     |   | |||| | |   | ||| |  || ||| |   |  | | ||||    |||   |      |  ||  ||  | |||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| || || |||
gtacgtgtatatgcttccaataattgtttcagacagactgttcttagaagtcttagatgatggaaaatgtat-ctccacatttgataaccttttcggaacaattttctctttatccagGAAAGAGATAACATGCAAAAGTCCGAGTTCTTAAAAGCATTATCAGATATGTGGAAAGATTTTGATTCCCGTGTATTACGGTATAAG

upper sequence: GLYMA09G00470.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G22870.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagatttttttagtttagccttttagcattaca-aaatgtataacatgcaaattttagagttg-aagttcttgatgatgtgtcctcctttccttcagGAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTGTCAGATATGTGGAAAGATTTTGATTCACGTGTATTGCGATACAAG
||| |  | ||  | ||||  | |   |  | | | | | ||  |   ||  | ||  | |  |  ||   |||   |   | |  |  |||  | ||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||| || || |||
gtatgtatattaaattttaatcatc--gtttcagacagacgtg-attttgatagttggaaacatataaaacctttggggcatttttttatttattgcagGAGAGAGACAACATGCAGAAGTCTGAGTTCTTAAAAGCATTATCAGATATGTGGAAAGACTTTGATTCTCGTGTATTACGGTATAAG

upper sequence: GLYMA09G00470.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv18s0089g00030.t01 (Vitis vinifera), 3'ss of exon 6
------------------------gtaagatttttttagtttagccttttagcattacaaaatgtataacatgcaaattttaga-gttgaagt--------tcttgatgatgtgtcctcctttccttcagGAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTGTCAGATATGTGGAAAGATTTTGATTCACGTGTATTGCGATACAAG
                        || |  |  ||||    ||   ||     |  |||   || || | | | |||  | ||| ||||  |         |||   | |    |  |  |||  | |||||||| ||||||||||||||||| |||||  |||||||||| || |||||||||||||||||||| || ||||| ||||| || |||
gtatgaagttatatttctttggatgtcacctgcttttgacataagattactaaaaaacattgtgcatgagaaggaaaaataagaagttggtggcaatggaatctgagtaacaaattttatttttttgcagGAAAGGGATAACATGCAGAAGTCTGAGTTTCTAAAAGCATTATCGGATATGTGGAAAGATTTTGACTCTCGTGTTTTGCGTTATAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacatgcaaattttagagttgaagttcttgatgatgtgtcctcctttccttcagGAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTGTCAGATATGTGGAAAGATTTTGATTCACGTGTATTGCGATACAAG
                                   tgtgtcctcctttcct  CT-rich tract
        aaattttaga  TA-rich tract