1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttctttaccctcgtcctttccatattttttgaaatttcgtggattccttagtctccacaagctaatctgttaaggtctggcttaaatatttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGCCCTGCTGGATCCCTCGTCTGCAGCACCGCTTGTTTGGCCATCCCCATTA
species | Glycine max |
transcript | GLYMA08G47310.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGCEST: gi|7925927|gb|AW831953.1|AW831953
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGCEST: gi|208339962|gb|GE134026.1|GE134026
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGCEST: gi|19348550|gb|BM893082.1|BM893082
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGCEST: gi|18729987|gb|BM525615.1|BM525615
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGCEST: gi|13562544|gb|BG550764.1|BG550764
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGCEST: gi|5057950|gb|AI736426.1|AI736426
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGCEST: gi|19053076|gb|BM731743.1|BM731743
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGCEST: gi|5607045|gb|AI901143.1|AI901143
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGCEST: gi|120495669|gb|EH223836.1|EH223836
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: TTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGCEST: gi|193447840|gb|FK410969.1|FK410969
genomic: TTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGCEST: gi|151399451|gb|EV269322.1|EV269322
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
tccttagtctccacaagctaatctgttaaggtctggcttaaatatttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGCCCTGCTGGATCCCTCGTCTGCAGCACCGCTTGTTTGGCCATCCCCATTA
agctaat putative branch site (score: 3)
tatttcttttc putative PPT
ttaaatatttcttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttctttaccctcgtcctttccatattttttgaaatttcgtggattccttagtctccacaagctaatctgttaaggtctggcttaaatatttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGCCCTGCTGGATCCCTCGTCTGCAGCACCGCTTGTTTGGCCATCCCCATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - ccctcgt
- - - - - - - -cctttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctggctt