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gtaatttctgattattttgaatgatgactattgtctattgctttatgtatttcataattaatacattgtttcttactatatctttgtcattttgtgtcttagTGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCCATGATGAAGAAGAGAAGCTGTTTGAATTCAAAACAGATGAGG
species | Glycine max |
transcript | GLYMA08G46090.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGGGGCCATTGTTAAAG TGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCCEST: gi|208169641|gb|GD973034.1|GD973034
genomic: GGGGGCCATTGTTAAAGgtaatttctg ... tgtgtcttagTGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCC
EST: GGGGCCATTGTTAAAG TGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCCEST: gi|208245349|gb|GE041673.1|GE041673
genomic: GGGGCCATTGTTAAAGgtaatttctg ... tgtgtcttagTGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCC
EST: GGGGGCCATTGTTAAAG TGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCCEST: gi|193609033|gb|FK561617.1|FK561617
genomic: GGGGGCCATTGTTAAAGgtaatttctg ... tgtgtcttagTGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCC
EST: GAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCATTGTTAAAG TGAAACTAATTGGTAAGCTACAAGATGGTGCTGC-TTTTTGAAAAAGGGCCEST: gi|193623338|gb|FK577796.1|FK577796
genomic: GAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCATTGTTAAAGgtaatttctg ... tgtgtcttagTGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCC
EST: GAAGGGAGGGGAAGGATATGGGCGTCCAAATGAGGGGGCCATTGTTAAAG TGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAA-GGGCCEST: gi|207686419|gb|GD669219.1|GD669219
genomic: GAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCATTGTTAAAGgtaatttctg ... tgtgtcttagTGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCC
EST: CCATTGTT-AAG TGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTTGAAAAAAGGGEST: gi|193648342|gb|FK595339.1|FK595339
genomic: CCATTGTTAAAGgtaatttctg ... tgtgtcttagTGAAACTAATTGGTAAGCTACAAGATGGTGCTGCC-TTTTTG-AAAAAGGG
EST: GGGGGCCGATTGTTAAAG TGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCCEST: gi|193514593|gb|FK471903.1|FK471903
genomic: GGGGGCC-ATTGTTAAAGgtaatttctg ... tgtgtcttagTGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCC
EST: GAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCATTGTTAAAG TGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCCEST: gi|193390749|gb|FK355507.1|FK355507
genomic: GAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCATTGTTAAAGgtaatttctg ... tgtgtcttagTGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCC
EST: GGCCATTGTTAAAG TGAAACTAATTGGTAAGCTACAAGATGGTGCTGCC-TTTTGAAAAAGGGCCEST: gi|208134532|gb|GD930925.1|GD930925
genomic: GGCCATTGTTAAAGgtaatttctg ... tgtgtcttagTGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCC
EST: GGGGGCCATTGTTAAAG TGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCCEST: gi|208131191|gb|GD931078.1|GD931078
genomic: GGGGGCCATTGTTAAAGgtaatttctg ... tgtgtcttagTGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCC
EST: GAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCATTGTTAAAG TGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCCEST: gi|193698977|gb|FK635022.1|FK635022
genomic: GAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCATTGTTAAAGgtaatttctg ... tgtgtcttagTGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCC
EST: GAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCATTGTTAAAG TGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCCEST: gi|207781046|gb|GD753653.1|GD753653
genomic: GAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCATTGTTAAAGgtaatttctg ... tgtgtcttagTGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCC
EST: GAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCATTGTTAAAG TGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCCEST: gi|207704899|gb|GD685560.1|GD685560
genomic: GAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCATTGTTAAAGgtaatttctg ... tgtgtcttagTGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCC
EST: GGGGCCATTGTTAAAG TGAAACTAATTGGTAAGCTACAAGATGGTEST: gi|208155862|gb|GD954450.1|GD954450
genomic: GGGGCCATTGTTAAAGgtaatttctg ... tgtgtcttagTGAAACTAATTGGTAAGCTACAAGATGGT
EST: GGGGGCCATTGTTAAAG TGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCCEST: gi|207750327|gb|GD722040.1|GD722040
genomic: GGGGGCCATTGTTAAAGgtaatttctg ... tgtgtcttagTGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCC
EST: GGGGGCCATTGTTAAAG TGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTTGAAAAAAGGGEST: gi|193645270|gb|FK587900.1|FK587900
genomic: GGGGGCCATTGTTAAAGgtaatttctg ... tgtgtcttagTGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTT-GAAAAA-GGG
EST: GGGGGCCATTGTTAAAG TGAAACTAATTGGTAAGCTACGAGATGGTGCTGCCTTTTTGAAAAAGGGCC
genomic: GGGGGCCATTGTTAAAGgtaatttctg ... tgtgtcttagTGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCC
tatttcataattaatacattgtttcttactatatctttgtcattttgtgtcttagTGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCCATGATGAAGAAGAGAAGCTGTTTGAATTCAAAACAGATGAGG
ttcttac putative branch site (score: 2)
tcatttt putative PPT
ataattaatacattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttctgattattttgaatgatgactattgtctattgctttatgtatttcataattaatacattgtttcttactatatctttgtcattttgtgtcttagTGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCCATGATGAAGAAGAGAAGCTGTTTGAATTCAAAACAGATGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG