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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccaaaggaaaaaaattcattgtatatctgtttcttgacaagttattgaaatgtctttttctctcttgtcctgtttcaattttttagGTATGCATTCCAGATTGTATTGCAAACAAGAGAGATGTTGCAAGCTTTGCCTTCTCTTGTTGACATACATGTTCCTGATGGCAAACATTTTACTGTTTGT

Basic information

species Glycine max
transcript GLYMA08G42380.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192332390|gb|FK026055.1|FK026055
EST:     GTGNNNNNNNTGATAGAAGATTTCAAGAATCAGAAATTCTTACATAAACG                         GTATGCATTCCAGATTGTATTGCAAACAAGAGAGATGTTGCAAGCTTTGCC
genomic: GTGAAAAAAATGATAGAAGATTTCAAGAATCAGAAATTCTTACATAAACGgtaccaaagg ... aattttttagGTATGCATTCCAGATTGTATTGCAAACAAGAGAGATGTTGCAAGCTTTGCC
EST: gi|19268653|gb|BM884909.1|BM884909
EST:     GTGNNNNNNNTGATAGAAGATTTCAAGAATCAGAAATTCTTACATAAACG                         GTATGCATTCCAGATTGTATTGCAAACAAGAGAGATGTTGCAAGCTTTGCC
genomic: GTGAAAAAAATGATAGAAGATTTCAAGAATCAGAAATTCTTACATAAACGgtaccaaagg ... aattttttagGTATGCATTCCAGATTGTATTGCAAACAAGAGAGATGTTGCAAGCTTTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgacaagttattgaaatgtctttttctctcttgtcctgtttcaattttttagGTATGCATTCCAGATTGTATTGCAAACAAGAGAGATGTTGCAAGCTTTGCCTTCTCTTGTTGACATACATGTTCCTGATGGCAAACATTTTACTGTTTGT
 tcttgac  putative branch site (score: 3)
 tgtctttttctctctt  putative PPT
 tgtttcaatttttta  TA-rich tract