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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttatttataattttcaatctggtatgagtgtttccttgatattctttaatagtgtatgcagtttattaacattgggtctgggtgacagACTGCTAATTTGGATGGGGAAACCAATTTGAAGATTAGGAAAGCATTGGAAAAAACTTGGGATTACGTGACTCCAGAGAAGGCATCTGAGTTTAAAG

Basic information

species Glycine max
transcript GLYMA08G40530.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G40530.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G326677_T01 (Zea mays), 3'ss of exon 5
gtttgttattta-taattttcaatctggtatgagtgtttccttga--tattctttaatag-----tgtatgcagtttattaacattgggtctgggtg-----acagACTGCTAATTTGGATGGGGAAACCAATTTGAAGATTAGGAAAGCATTGGAAAAAACTTGGGATTACGTGACTCCAGAGAAGGCATCTGAGTTTAAAG
     |||||   | ||||| || |||     | | |||  |||    |||  |  || |     | ||| || |||||| |  | |  |     |       ||||| || ||| | ||||||||||| ||| |||| || ||||| || ||||| ||||||||||| || || | ||| || ||||| |||||||| ||||
-----ttattggctcattttgaaactgaagcaaatctttatttggctcatttatacatggaggtttatattca-tttatttatttcgaataaaaatataattgcagACAGCAAATCTTGATGGGGAAACAAATCTGAAAATAAGGAAGGCTTTGGAGAAAACTTGGGACTATGTAATTCCTGAAAAGGCTTCTGAGTTCAAAG

upper sequence: GLYMA08G40530.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------------------------------------------gtttgttatt-tataattttcaatctggtatgagtgtttccttgatattctttaatagtgtatgcagtttattaacattgggtctgggtgacagACTGCTAATTTGGATGGGGAAACCAATTTGAAGATTAGGAAAGCATTGGAAAAAACTTGGGATTACGTGACTCCAGAGAAGGCATCTGAGTTTAAAG
                                                                  | || ||   |   |||||   | |  ||||    ||   || || |  |||  | || | |    ||   |    ||   | |   | ||||||||| ||| ||||||| ||||| ||||||||||| || |||||||||||||| |||||||| ||| |||||||||| || || || || || ||||
gtttttttcccttcttttataccctatttgagtaattctttattttttggagcttaacacagttaatctgatagagtgggatttttttttttttatggtaattctttttat-tcattttttggtttgtttttttccctgctgttttcttttaatcacagACTGCAAATCTGGATGGTGAAACAAATTTGAAGATCAGAAAAGCATTGGAAAAGACTTGGGACTACTTGACTCCAGAAAAAGCCTCAGAATTCAAAG

upper sequence: GLYMA08G40530.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ38622 (Selaginella moellendorffii), 3'ss of exon 6
gtttgttatttataattttcaatctggtatgagtgtttccttgatattctttaatagtgtatgcagtttattaacattgggtctgggtgacagACTGCTAATTTGGATGGGGAAACCAATTTGAAGATTAGGAAAGCATTGGAAAAAACTTGGGATTACGTGACTCCAGAGAAGGCATCTGAGTTTAAAG
                          |||    |     |||||  |       | ||  || || |  | |  | ||   |||||    |||||  ||||  | ||||| ||||| |||||||||||| | |||||| | |||||||| ||||||||| ||  ||| || |||||  | || |||| ||
--------------------------gtactgtttacatcttgacgtctagagttcgttcattcactgaagtttc-tttcatctggtc--cagACATCTAACCTTGATGGAGAAACTAATTTGAAGATTCGCAAAGCACTAGAAAAAACCTGGGATTACATGTATCCCGATAAGGCGCCAGACTTTAGAG

upper sequence: GLYMA08G40530.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ31523 (Selaginella moellendorffii), 3'ss of exon 6
gtttgttatttataattttcaatctggtatgagtgtttccttgatattctttaatagtgtatgcagtttattaacattgggtctgggtgacagACTGCTAATTTGGATGGGGAAACCAATTTGAAGATTAGGAAAGCATTGGAAAAAACTTGGGATTACGTGACTCCAGAGAAGGCATCTGAGTTTAAAG
                          |||    |     |||||  |       | ||  || || |  | |  | ||   |||||    |||||  ||||  | ||||| ||||| |||||||||||| | |||||| | |||||||| ||||||||| ||  ||| || |||||  | || |||| ||
--------------------------gtactgtttacatcttgacgtctagagttcgttgattcactgaagtttc-tttcatctggtc--cagACATCTAACCTTGATGGAGAAACTAATTTGAAGATTCGCAAAGCACTAGAAAAAACCTGGGATTACATGTATCCCGATAAGGCGCCAGACTTTAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgatattctttaatagtgtatgcagtttattaacattgggtctgggtgacagACTGCTAATTTGGATGGGGAAACCAATTTGAAGATTAGGAAAGCATTGGAAAAAACTTGGGATTACGTGACTCCAGAGAAGGCATCTGAGTTTAAAG
                              tattaac  putative branch site (score: 1)
     atattctttaatagt  TA-rich tract