1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtttgtggtagtttgttgagaaaatattttcttttaagttattggctctctcatattcctatagacttcctgttattgtatattttaattattatctttgttgactctaataatattaaaatgttttccagTTCATGACAGACGTGACCAAGTTTATAAGTGGATGCATGGCATGTCTTTCTGCGATGGTTCAACTTGAACTACCTCATGTTAATATCCTCTCAAAGATGG
species | Glycine max |
transcript | GLYMA08G39880.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGAAACGGAAAAATTTTAGTGTTTGTGCTGTTTACTTACTTGATTCACAG TTCATGACAGACGTGACCAAGTTTATAAGTGGATGCATGGCATGTCTTTCTEST: gi|51341249|gb|CO982566.1|CO982566
genomic: TGAAACGGAAAAATTTTAGTGTTTGTGCTGTTTACTTACTTGATTCACAGgtttgtggta ... tgttttccagTTCATGACAGACGTGACCAAGTTTATAAGTGGATGCATGGCATGTCTTTCT
EST: TGAAACGGAAAAATTTTAGTGTTTGTGCTGTTTACTTACTTGATTCACAG TTCATGACAGACGTGACCAAGTTTATAAGTGGATGCATGGCATGTCTTTCTEST: gi|192299207|gb|FG988665.1|FG988665
genomic: TGAAACGGAAAAATTTTAGTGTTTGTGCTGTTTACTTACTTGATTCACAGgtttgtggta ... tgttttccagTTCATGACAGACGTGACCAAGTTTATAAGTGGATGCATGGCATGTCTTTCT
EST: TGAAACGGAAAAATTTTAGTGTTTGTGCCGTTTACTTACTTGATTCACAG TTCATGACAGACGCGACCAAGTTTATAAGTGGATGCATGGCATGTCTTTCTEST: gi|192297924|gb|FG993203.1|FG993203
genomic: TGAAACGGAAAAATTTTAGTGTTTGTGCTGTTTACTTACTTGATTCACAGgtttgtggta ... tgttttccagTTCATGACAGACGTGACCAAGTTTATAAGTGGATGCATGGCATGTCTTTCT
EST: GAAACGGAAAAAATTTTAGTGTTTGTGCTGTTTACTTACTTGATTCACAG TTCATGACAGACGTGACCAAGTTTATAAGTGGATGCATGGCATGTCTTTCTEST: gi|192306145|gb|FG996577.1|FG996577
genomic: GAAACGG-AAAAATTTTAGTGTTTGTGCTGTTTACTTACTTGATTCACAGgtttgtggta ... tgttttccagTTCATGACAGACGTGACCAAGTTTATAAGTGGATGCATGGCATGTCTTTCT
EST: TGAAACGGAAAAATTTTAGTGTTTGTGCTGTTTACTTACTTGATTCACAG TTCATGACAGACGTGAC-AAGTTTATAAGTGGATGCATGGCATGTCTTTCTEST: gi|192297923|gb|FG993202.1|FG993202
genomic: TGAAACGGAAAAATTTTAGTGTTTGTGCTGTTTACTTACTTGATTCACAGgtttgtggta ... tgttttccagTTCATGACAGACGTGACCAAGTTTATAAGTGGATGCATGGCATGTCTTTCT
EST: TGAAACGGAAAAATTTTAGTGTTTGTGCTGTTTACTTACTTGATTCACAG TTCATGACAGACGTGACCAAGTTTATAAGTGGATGCATGGCATGTCTTTCTEST: gi|9903086|gb|BE612054.1|BE612054
genomic: TGAAACGGAAAAATTTTAGTGTTTGTGCTGTTTACTTACTTGATTCACAGgtttgtggta ... tgttttccagTTCATGACAGACGTGACCAAGTTTATAAGTGGATGCATGGCATGTCTTTCT
EST: AATTTTAGTGTGTGGGCTGTTTACTTACTGGATTCACAG TTCATGACAAACGTGACCAAG-TTATTAAGTGGATGCATGGCATGTCTTTC
genomic: AATTTTAGTGTTTGTGCTGTTTACTTACTTGATTCACAGgtttgtggta ... tgttttccagTTCATGACAGACGTGACCAAGTTTA-TAAGTGGATGCATGGCATGTCTTTC
tgtatattttaattattatctttgttgactctaataatattaaaatgttttccagTTCATGACAGACGTGACCAAGTTTATAAGTGGATGCATGGCATGTCTTTCTGCGATGGTTCAACTTGAACTACCTCATGTTAATATCCTCTCAAAGATGG
ctctaat putative branch site (score: 3)
tgttttcc putative PPT
attttaattattatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtggtagtttgttgagaaaatattttcttttaagttattggctctctcatattcctatagacttcctgttattgtatattttaattattatctttgttgactctaataatattaaaatgttttccagTTCATGACAGACGTGACCAAGTTTATAAGTGGATGCATGGCATGTCTTTCTGCGATGGTTCAACTTGAACTACCTCATGTTAATATCCTCTCAAAGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG