1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cagagggtaccttgtgaacctgactttgccacgccatagtctcattttcttcctgttactgatgccaactgagcaatgttatatctctattcccttgcagATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGATAAAATGACATTGATTGAG
species | Glycine max |
transcript | GLYMA08G28320.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATTAG ATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGATEST: gi|10253404|gb|BE821170.1|BE821170
genomic: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGgtttgtggtt ... tcccttgcagATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT
EST: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAG ATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGATEST: gi|13789330|gb|BG651921.1|BG651921
genomic: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGgtttgtggtt ... tcccttgcagATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT
EST: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAG ATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGATEST: gi|151396331|gb|EV266208.1|EV266208
genomic: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGgtttgtggtt ... tcccttgcagATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT
EST: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAG ATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGATEST: gi|51342958|gb|CO983700.1|CO983700
genomic: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGgtttgtggtt ... tcccttgcagATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT
EST: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAG ATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGATEST: gi|151412110|gb|EV281922.1|EV281922
genomic: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGgtttgtggtt ... tcccttgcagATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT
EST: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCTGGAATTATCAG ATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGATEST: gi|58018455|gb|CX705197.1|CX705197
genomic: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGgtttgtggtt ... tcccttgcagATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT
EST: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAG ATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT
genomic: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGgtttgtggtt ... tcccttgcagATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT
tttcttcctgttactgatgccaactgagcaatgttatatctctattcccttgcagATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGATAAAATGACATTGATTGAG
tactgat putative branch site (score: 2)
tatctctattccctt putative PPT
aatgttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagagggtaccttgtgaacctgactttgccacgccatagtctcattttcttcctgttactgatgccaactgagcaatgttatatctctattcccttgcagATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGATAAAATGACATTGATTGAG
- - - -taccttg
- - - - - - - - - cctgact
- - - - - - - - - - - - - - ccacgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgtt