Sequence
atgc intronic sequence ATGC exonic sequencegtaagtattacattaattaataatgcaatatgtatgtactcataaaatgataaaaaatagtacttgtttgataaactaattaactttgttgttgattctcagTTACTCAATCCCACAGAATTTTTTGCGGACATTGTAGTTGAACATGAATATGTTGAGTGCACTGGATCTGCAATCCAAGCTTTAGTTTTGTTCAAGAATC
Basic information
species | Glycine max |
transcript | GLYMA08G24160.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G24160.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01280.t01 (Vitis vinifera), 3'ss of exon 10
gtaagtattacattaattaataatgcaatatgtatgtactcataaaatgataaaaaatagtacttgtttgataaactaattaactttgt-tgttgattctcagTTACTCAATCCCACAGAATTTTTTGCGGACATTGTAGTTGAACATGAATATGTTGAGTGCACTGGATCTGCAATCCAAGCTTTAGTTTTGTTCAAGAATC
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gtaagattcttgataataaaccaactttcttttctaactttgcta---gctttaacatccttggagactaacaaaacaatgatgcagGTATGTTGAGTG-CACTGCATCAGCAATTCAGGCTCTAGTTTTGTTTAAGAAGTTATACCTGGG-ACACAAGAAGAAGGAGATAGACAATTTCATCACAAAT--------------
upper sequence: GLYMA08G24160.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01230.t01 (Vitis vinifera), 3'ss of exon 13
gtaagtattacattaattaataatgcaatatgtatgtactc-ataaaatgataaaaaatagtacttgtttgataaactaattaactttgttgttgattctcagTTACTCAATCCCACAGAATTTTTTGCGGACATTGTAGTTGAACATGAATATGTTGAGTGCACTGGATCTGCAATCCAAGCTTTAGTTTTGTTCAAGAATC
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gtaagattcttgataatagaccttcttttctaactctactagatttaacttccttggagactaacaaaacgatgatccagGTATGTTGAGTGCACTGCATCAGCAATTCAGGCTC-TAGTTTTGTTTA-AGAAGTTATAC-----CCCGAACACA--GGACGGAGGAGATAGACAATTTCATCACAAAT--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209716122|gb|BW662320.1|BW662320EST: AAGGTGGTTTAGCTGCATGGGAGCTTGCAGGAGCTCAAGAGTGGTTAGAA TTACTCAATCC
genomic: AAGGTGGTTTAGCTGCATGGGAGCTTGCAGGAGCTCAAGAGTGGTTAGAAgtaagtatta ... tgattctcagTTACTCAATCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgataaaaaatagtacttgtttgataaactaattaactttgttgttgattctcagTTACTCAATCCCACAGAATTTTTTGCGGACATTGTAGTTGAACATGAATATGTTGAGTGCACTGGATCTGCAATCCAAGCTTTAGTTTTGTTCAAGAATC
ttctc CT-rich tract
tttgataaactaatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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gtaagtattacattaattaataatgcaatatgtatgtactcataaaatgataaaaaatagtacttgtttgataaactaattaactttgttgttgattctcagTTACTCAATCCCACAGAATTTTTTGCGGACATTGTAGTTGAACATGAATATGTTGAGTGCACTGGATCTGCAATCCAAGCTTTAGTTTTGTTCAAGAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT