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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaagacatctttaattaatcagaatgtgtgtatgtacatatcctttttctatgaaaatgacagttgtctattatatcaattacagGAAGATCTTTATTATCCACATCCTTTGGTACAAGATCTAATATGGGATAGTTTATACATATTTACTGAGCCATTGCTTACTCGTTGGCCTTTCAACAAGT

Basic information

species Glycine max
transcript GLYMA08G24160.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01140.t01 (Vitis vinifera), 3'ss of exon 2
gtgaaagacatctttaattaatcagaatgtgtgtatg-tacatatcctttttctatgaaaatgacagttgtctattatatcaattacagGAAGATCTTTATTATCCACATCCTTTGGTACAAGATCTAATATGGGATAGTTTATACATATTTACTGAGCCATTGCTTACTCGTTGGCCTTTCAACAAGT---------------------------------
      |  |  |||| |||  |  ||    |   |  | || ||  ||  |   |  |   |||| |     |   | || ||| |||||  |||| || ||| | | | | ||  || | ||| | || |||||| || ||||||||||||| ||||| || || |||| |||||| ||||||||||                                 
------gtaagttttagttatactaaaaccatccgtccttcaaatatttcatgcttacatgagacattctgtcaaattttctattgcaggagaatctctactattcccgttcgttaatatagGATTTGATGTGGGATGGTATATACATATTTACCGAGCCTTTTCTGACTCATTGGCCCTTCAACAAGTTGAGGGAAAAGGCTCTTGAAACAACAATGAAAC

upper sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01360.t01 (Vitis vinifera), 3'ss of exon 4
gtgaaagacatctttaattaatcagaatgtgtgtatg-tacatatcctttttctatgaaaatgacagttgtctattatatcaattacagGAAGATCTTTATTATCCACATCCTTTGGTACAAGATCTAATATGGGATAGTTTATACATATTTACTGAGCCATTGCTTACTCGTTGGCCTTTCAACAAGT
|| |        |||   |    |   | | | | |  ||   ||    ||   ||| |    |||  | || |   | |  ||| ||||| ||||| || ||  | |||||  |  |||||||||| || ||||||||||| ||||||| |||||||||  | |||||||||||||| ||||||||||
gtaagttttgattttgtatggaaaacttttctttttcctatgaatatgcttcgcatgcatgaaacacat-tcaaaattgtttattgcagGAGGATCTCTACTACTCCCATCCCCTAATACAAGATCTGATGTGGGATAGTTTGTACATATGTACTGAGCCTCTTCTTACTCGTTGGCCCTTCAACAAGT

upper sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01410.t01 (Vitis vinifera), 3'ss of exon 6
gtgaaagacatctttaattaatcagaatgtgtgt-----atgtacatatcctttttctatgaaaatgacagttgtctattatatca-attacagGAAGATCTTTATTATCCACATCCTTTGGTACAAGATCTAATATGGGATAGTTTATACATATTTACTGAGCCATTGCTTACTCGTTGGCCTTTCAACAAGT
|| |        |||   |    | ||| | | |     ||| | ||        |  ||||||   ||| ||    ||| | | | ||| ||||| ||||| || || || |||||  |  ||||||||||||| ||||||||||| ||||||| ||| |||||  | |||||||||||||| ||||| ||||
gtaagttttgattttttatggaaacaatttctttttcctatgaatatgctacgcatgcatgaaacacacatttaaa-attgtttaatattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTAATGTGGGATAGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAAAAAGT

upper sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01220.t01 (Vitis vinifera), 3'ss of exon 6
gtgaaag-acatctttaattaatcagaatgtgtgtatg-tacatatcctttttctatgaaaatgacagttgtctattat-atcaattacagGAAGATCTTTATTATCCACATCCTTTGGTACAAGATCTAATATGGGATAGTTTATACATATTTACTGAGCCATTGCTTACTCGTTGGCCTTTCAACAAGT
||||    |  | | |||   |  ||  |  || | |  |    ||      |  ||| |    ||| |  |  |  ||  |  ||| ||||| ||||| || || || |||||  |  |||||||||| || |||||| |||| ||||||| ||| |||||  | |||||||||||||| ||||||||||
gtgagtttagctttctaacagaaaagctttcgtatttcctgtgaatataacgtacatgcatgaaacactcattcaaaattgtttattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTGATGTGGGATGGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAACAAGT

upper sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01280.t01 (Vitis vinifera), 3'ss of exon 2
gtgaaagac-atctttaattaatcagaatgtgtgtatgtacatatcctttttctatgaaaatgacagttgtctattatatcaattacagGAAGATCTTTATTATCCACATCCTTTGGTACAAGATCTAATATGGGATAGTTTATACATATTTACTGAGCCATTGCTTACTCGTTGGCCTTTCAACAAGT
|| |      || ||| ||  |    | |   | |  |||   ||    |     || |    |||  | || |   | |  ||| ||||| ||||| || || || |||||  |  ||||||||||||| |||||||||||  |||||| ||| ||||| || |||||||||||||| ||||||||||
gtaagttttgattttttatggaaacaatttctttttcgtatgaatatgctacgcgtgcatgaaacacat-tcaaaattgtttatttcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTAATGTGGGATAGTTTGAACATATGTACCGAGCCTTTTCTTACTCGTTGGCCCTTCAACAAGT

upper sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01390.t01 (Vitis vinifera), 3'ss of exon 6
gtgaaagacatcttta-attaatcagaatgtgtgtatgtacatatcctttttctatgaaaatgacagttgtctat-tatatcaattacagGAAGATCTTTATTATCCACATCCTTTGGTACAAGATCTAATATGGGATAGTTTATACATATTTACTGAGCCATTGCTTACTCGTTGGCCTTTCAACAAGT
|| |        |||  ||  | ||   |   | |    |   ||    |    ||| |    |||    |  |  ||| |  |||  |||| ||||| || || || |||||  |  |||||||||| || ||||||||||| ||||||| ||| |||||  | |||||||||||||| ||||||||||
gtaagttttgattttgtatggaacacttttccttttccgatgaatatgctacgcatgcatgaaacacacattcaaatatgtttattgtagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTGATGTGGGATAGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAACAAGT

upper sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01480.t01 (Vitis vinifera), 3'ss of exon 7
gtgaaagacatcttta-attaatcagaatgtgtgtatgtacatatcctttttctatgaaaatgacagttgtctat-tatatcaattacagGAAGATCTTTATTATCCACATCCTTTGGTACAAGATCTAATATGGGATAGTTTATACATATTTACTGAGCCATTGCTTACTCGTTGGCCTTTCAACAAGT
|| |        |||  ||  | ||   |   | |    |   ||    |    ||| |    |||    |  |  ||| |  ||| ||||| ||||| || || || |||||  |  |||||||||| || ||||||||||| ||||||| ||| |||||  | |||||||||||||| ||||||||||
gtaagttttgattttgtatggaacacttttccttttccgatgaatatgctacgcatgcatgaaacacacattcaaatatgtttattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTGATGTGGGATAGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAACAAGT

upper sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 10
gtgaaagacatctttaattaatcagaatgtgtgtatgtacatatcctttttctatgaaaatgacagttgtctattatatcaattacagGAAGATCTTTATTATCCACATCCTTTGGTACAAGATCTAATATGGGATAGTTTATACATATTTACTGAGCCATTGCTTACTCGTTGGCCTTTCAACAAGT
||||        |||   |    | | | |   | |    ||     |  |  |     |||| |    |  |  ||    ||| ||||| ||||| || || || |||||  |  |||||||||| || ||||||||||| ||||||| |||||||||  | |||||||||||||| || |||||||
gtgagttttgattttgtatgga-aaacttttctttttcctatgaatatgcttcacatgcatgaaacacattcagaattgttattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTGATGTGGGATAGTTTGTACATATGTACTGAGCCTCTTCTTACTCGTTGGCCCTTTAACAAGT

upper sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01230.t01 (Vitis vinifera), 3'ss of exon 6
gtgaaagacatcttta-attaatcagaatgtgtgtatgtacatatcctttttctatgaaaatgaca-gttgtctattatatcaattacagGAAGATCTTTATTATCCACATCCTTTGGTACAAGATCTAATATGGGATAGTTTATACATATTTACTGAGCCATTGCTTACTCGTTGGCCTTTCAACAAGT
|| |        |||  ||  | ||   |   | |    |   ||    |    ||| |    |||   | || |   | |  ||| ||||| ||||| || || || || ||  |  |||||||| | || ||||||||||| ||||||| ||| |||||  | |||||||||||||| ||||||||||
gtaagttttgattttgtatggaacacttttccttttccgatgaatatgctacgcatgcatgaaacacactttcaaaattgtttattgcagGAGGATCTCTACTACCCCCACCCCCTAATACAAGATATGATGTGGGATAGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAACAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgtacatatcctttttctatgaaaatgacagttgtctattatatcaattacagGAAGATCTTTATTATCCACATCCTTTGGTACAAGATCTAATATGGGATAGTTTATACATATTTACTGAGCCATTGCTTACTCGTTGGCCTTTCAACAAGT
                                    tctattatatcaatta  TA-rich tract